Tachysurus fulvidraco (yellow catfish): 113641588
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Entry
113641588 CDS
T08119
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113641588 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113641588 (smarcc1b)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113641588 (smarcc1b)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113641588 (smarcc1b)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113641588 (smarcc1b)
PBAF complex
113641588 (smarcc1b)
GBAF(ncBAF) complex
113641588 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
113641588
NCBI-ProteinID:
XP_027000187
LinkDB
All DBs
Position
24:18362157..18375632
Genome browser
AA seq
1001 aa
AA seq
DB search
MAAQTAGSASGSAALRRKKDGGPCADLWEHTDILSQLETVRCWIGKHYKKYVQVDAPSSK
SLSALVIQLLQFQEDAFGLKASDPDLTKLPVKCFLDMKPGGGLCHILGSVYKFKTEQGWR
RFDLQNPSRVDRNVEMFVSVEKTLVQNNLLSRPVVYLSPDLDQKQASKLIDIIMRHKGSV
TEDRLQATHQVYPTPTSVDEEDWFRPVMQISNHVMVHWGMYPDSYDTWLSASDVDVDVEE
TPGSERPWRVHAKWVLDTDVFNEWMNEEDYEVDDSKRSASYRRHIYPRDEEECKTSGKKR
RRSPSPPSESRKKGGKKGLYKRRGQQEEVEPEEDLTKDMEDPVPVPNMEEVKLPKNINLK
KDSENTPVKGGTMTDLDDQEDEFLSGFRDDEDQGREFGRGMEEEESTIKQTHHIIIPSYA
SWFDYNCIHRIERRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNL
TGDVCALMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDIPSALVPLQHRPLQ
VSASQHMLHFPEKSKEKPSDLQNFGLRTDIYAKKHPKTKGANAGREWTEQETLLLLEALE
MYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSEASMGPLAYQPVPFSQSGNPVM
STVAFLASVVDPRVASSAAKAALEEFSRVREQASPELFNPPDLKMQDPEASLSELEPSFG
LQMSTSSGPQAEQQEKPDGSRVDKVEFDTEHHDQVFQPIGENTAGEGERVKHEKEEMEGE
KEEESKAEDCLEVAQGTPGEHVERRRRVELELVEANIATAAAAALASAATKAKHLAAVEE
RKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHMEQVKY
AEIKARQQLEQQQGGASQSSGPAFNPLHGRTVGSGGAGQVMGIGGAGQVMGSGGAGQVMG
SGGAGQVMGSQHTGAPNGTYQTPPSSQSEGATPISRPPMDS
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagaccgcgggctcggcctccggcagtgcagcactgaggcggaagaaggac
gggggaccgtgtgcggacttgtgggagcacacagacatcctctcacagctagagacggtt
cgctgttggatcgggaaacattacaaaaagtatgtgcaggttgatgctccttccagcaag
tctctctcagcactggtcatccagctgctgcagtttcaggaggatgcttttggtcttaaa
gccagtgacccggacctcactaaactgccagtaaagtgtttcctagacatgaaaccagga
ggtggtctctgtcatattctaggctctgtgtacaagtttaaaactgagcagggttggcgg
cgctttgacctacagaacccatctcgagtggaccgcaacgtggagatgtttgtcagtgtg
gagaaaacactggtacagaacaatctcctgagcaggcctgtggtgtatctgtcaccagac
ctagaccagaaacaagccagcaaactcatagacatcatcatgagacacaagggttcggtc
acagaggaccggttacaagcgacccatcaggtctaccctactcccacttcagtagatgaa
gaagattggtttagaccggtcatgcagatcagtaatcatgtgatggttcactggggcatg
tatccagacagttatgatacgtggctgtcagccagtgatgtggatgtggatgtagaggaa
actcccggttcagagcgaccttggcgggtacatgctaagtgggttctcgacacagatgtg
tttaatgagtggatgaacgaggaagactatgaggtggatgatagcaaacggagcgcgagt
taccgaaggcacatctacccccgagatgaagaggaatgcaagacctcagggaagaagaga
cgacgctcgccttctcctccatctgagtccaggaagaaaggagggaaaaagggtttgtat
aagaggcgtggccaacaggaagaggtggagccagaagaagacctgactaaagacatggag
gacccagtacctgtgcccaacatggaggaggtcaaactgcctaaaaacataaacctgaag
aaagacagcgagaacacaccagtgaaaggaggaaccatgactgacttggatgaccaagaa
gacgagttcctgtctggattcagggatgacgaggatcagggacgagagtttgggcgtggc
atggaagaagaagagagcaccataaagcagactcatcacatcatcatccccagctatgcc
tcttggtttgactacaactgtattcaccggatagagaggagagcactgcccgagttcttt
aacgggaagaacaagtccaaatcccctgagatatatttggcttatcgtaacttcatgatc
gatacgtatcgactaaaccctcaggagtacctgacttccacctcctgcagacggaacctc
acaggagatgtgtgtgcccttatgagggtccatgcattcctggagcagtggggtttgatt
aattaccaggtggatgctgagagcagacctcttcctatgggccctccacctacacctcac
tttaatgttctcacagacattccctcagccctggtccctctacagcacagaccgttacag
gtttcagcctctcagcatatgctccatttcccagagaagagcaaagaaaaaccatcagac
ctgcaaaactttggtcttcgaacggatatttatgcgaagaagcatcctaagactaaagga
gcaaacgcaggacgtgagtggacagaacaggaaactctcttgcttctggaggcattagag
atgtataaagacgactggaataaggtctctgagcatgtgggaagccgcacacaggacgag
tgtatcctgcacttccttcgcttgcccatagaggacccgtacttagagaactcagaagct
tcaatgggcccgctcgcctaccagcctgttccctttagccagtcaggaaacccggtcatg
agcacagtggctttcctcgcctctgtcgtggaccccagagtggcatcttctgctgccaag
gctgccctggaggaattctctcgtgtacgagaacaagcttctccagagctcttcaatccc
cctgacctcaaaatgcaagatcctgaggccagtttatctgaacttgagccttccttcgga
ttgcagatgagtaccagttctgggccgcaggcagagcaacaggagaaacctgatggatcc
agagtggacaaagtggagtttgacacagaacaccatgaccaggtgtttcagccaatcgga
gaaaacactgcaggagagggagagcgagtaaagcatgaaaaggaggagatggaaggagag
aaagaagaggagagcaaagctgaagactgtttggaagtggcccaggggacaccaggggaa
catgtggagagaaggaggagggtggagctcgaactggttgaagcgaatattgccacagca
gctgcagctgccctggcttctgctgccaccaaggccaaacacttggctgctgtggaggaa
aggaagattaagtctcttgtggctttgctggtagagacccagatgaagaagctggagata
aagctgaggcattttgaggagctggagaccatcatggaccgggagaaagaggctctggag
cagcagcggcagcagttgctgtcagagaggcagaacttccacatggagcaggtgaagtac
gctgagataaaagcacggcagcagctggaacagcaacagggcggagcctcacagagcagt
ggacctgcctttaaccctctacatggtcgtacagtgggcagtggaggggcggggcaggtg
atgggcattggaggggcggggcaggtgatgggcagtggaggggcgggacaggtgatgggc
agtggaggggcggggcaggtgatgggctcacagcatactggtgctcctaatggcacatac
cagactccaccttcctcccagtctgaaggggccacacctatttcccggcccccgatggac
agctga
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integrated database retrieval system
