Tachysurus fulvidraco (yellow catfish): 113642389
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Entry
113642389 CDS
T08119
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113642389 (htt)
04131 Membrane trafficking [BR:
tfd04131
]
113642389 (htt)
03029 Mitochondrial biogenesis [BR:
tfd03029
]
113642389 (htt)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113642389 (htt)
Membrane trafficking [BR:
tfd04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
113642389 (htt)
Mitochondrial biogenesis [BR:
tfd03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
113642389 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
HEAT_ECM29
Vac14_Fab1_bd
Motif
Other DBs
NCBI-GeneID:
113642389
NCBI-ProteinID:
XP_047668007
LinkDB
All DBs
Position
4:22841377..22885068
Genome browser
AA seq
3130 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQQGPLSAEELVQKQKKDLATTKKDRVTHCLTICENIVAQS
LRTSPEFQKLLGIAMEMFLLCSDDKESDVRMVADECLNKIIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEETVQETLASSIPK
IMAALGNFANDTEIKVILKAFVANLKSSSPTIRRTAASSAVSVCQHSRRTNYFYTWLLNV
LLGLVVPVDEEHSSHLILGVLLTLRYLMPLLQQQDASTSLKGSFGVMRKEADISPTPEQL
VQVYELTLHYTQHRDHNVVTASLELLQQLFRTPSPELLNTLIIPGKIAHTRVFREEMESR
ARSGSIVELIAGGSTSSPLVLRKPKGKILSGEEEGLEDDPEKAEVTTGSFTASVGAESSS
DAASSSGVASLSQADIITEQPRSSQHALQPGDSVDLSASSEQGGGPDTPDDEDEDMLSRS
SSSAARVVGATTDLHSETNPSAGAGSSSPPSDSSQTTTEGPDSAVTPSDCAELVFDGSES
QYSGMQIGTLQDEEEEGAAPAPDEAPETLAHSVLALSKPHLLEGKGHNRQASDSSVDRFI
PKDEVLEPVDLDNKLSRIKGDIGHYTDPAEAPLMHCVKLLSASFLLTGQRNGLVPDKEVR
VSVKALAVSCVGAAAALLPETFFNKLYLEPLDGQQTNEQQYISDILLYIKHGDPQIRGAT
AILCGALIQAILLKTRFSTESWLTRIHSTTGNKVSLEDIVPLLQRSLKDESSVTCKMACS
AVRHCIMALCCSSLSELGLQLIIDLLTLRDCSYWLVRNELLETLAEVDFRLLCFLERKTE
KLHKGEHHYTGLLRLQDRVIKDVVLYLLGDDDPRVRHVAASIVTRLVSRLFYDCDQAQAD
PVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYSLSPGVSDVTVENNLSRVITS
ISHALTSSTSRALTFGCCEALCLLSFSFPVCTWSTGWHCGFVTSPVFNYGRSSQSRSQAR
SYSLTQSQSGSSEDSRRSLIVGMASMVLSLLSSAWFPLDLSSHQDALILAGNLLAAAAPK
CMKSPWGGEEDSGSAPSKQEEAWPALSDRSLVAMAEQLFTHLLKVLNICAHVLEDMSPGP
AVKASLPSLTNTPSLSPIRRKGKEKDMTEPSTTPMSPKKGGETNAGRPADSTGTAPASKS
TSVGSFYHLPPYLKLYDVLKATHANYKVTLDLHNTNEKFGSFLRSALDVLSQLMELATLH
DIGKCVEEILGYLKSCFSREPTLATVCVQQLLKTLFGTNLASQYDGTSSHPCRSQGKALR
LGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEHEQDASGWFDVMQKVSNQLRSS
ITNVTRHRGDKNAIHNHIRLFEPLVIKALKQYTTSTCVALQRQVLDLLAQLVQLRVNYCL
LDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIFFFLVLLSYERYHSKQIISIPKIIQLC
DGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELETQKEVVVSMLLRLIQHHQV
LEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQMHLDSPEALGVLNTLFETVAPS
SLRPVDMLLKSMFVTPSTMVLVGTMQLWVSGILAILRVLISQSTEDIILCRVQELSLSTF
LLSCSAICRLHNNESSSPAAPTSADAETNEEPQRFLPEETFARFLLQLVGVLLDEISSKQ
VKVDMTEQQHTFYCQQLGTLLMCLIHIFKSGMFRRITAAGSRLLKVEGTEGVNFYTLEGL
NGLVLQLITTHPSLVLLWCQVLLIINYTNYTWWSEVHQTPRRHSLSSTKLLSPHSSGEDE
EQRPEGKQAMCNREIVRRGALILFCDYVCQNLHDSEHLTWLTVNHVRDLISLSHEPPVQD
FISAVHRNSAASGLFIQAIQSRCDNLSTPVMLKKTLQCLEGIHLSQSGALLMLYVDKLLN
TPFRVLARMVDTLACRRVEMLLAETLQNSIAQLPVEELDRIQQYLQTSGLAQRHQRFYSL
LDRFRATVAEETTSPSPPITSHPLDGNPPPAPESVTATKDWYVSLVKSQCCVRGEGSLFE
TTDLLTKLPQTDLNAIMSCKDFNLCLLAPCLSVGLQRLCRDQGAVLFETTLQVIFEQLAS
ITALLPSPHQPLVLSSQPNTDSSYWNALSSVYGEAGFYQRVMSVCGALSRYLLSLPKLPS
ALQIPPATEHLITSFTTLVIELVTWRLLQDQLPLSVDMQMSVSCLCLALQQPSVWADFAS
LTYLTHTCSIIHCIHLVIYAVTVGPGDQLVRQKRKTHTDRDSEEDQVDSAKRNLGEQQCC
EIMAELVESLQSVLALGHHRNSNIPAFLTPVLRNVIISLARLPLVNSYTRIPPMVWKLGW
SPRRGGDFGTALPEIPVEFLQEKDIFREFLYRINVLGWSSRTQFEETWATLLGVLVTQPI
TIDQEEETQQEEDLERTQINVLAVQAITSLVLSAMTLPTAGNPAVSCLEQQPRNKTLKAL
DTRFGRKLSAIRGVVEKEIHAMVSKRDNIATHFPYQAWDPVPSLSSSSAGTLISHEKLLL
QINTEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWGDDEEDETDAPAAASPPTSPINS
RKHRAGVDIHSCSQFLLELYSQWILPGSPSSRKTPVMLISEVVRSLLAVSDLFTERNQFD
MMFSTLMELQKVHPPEDEILNQYLVPAICKAAAVLGMDKMTAEPVYRLLESSLRSTHLPS
RIGALHGVLYVLECDLLDDTARQLIPTVSEYVLSNLRAIAHCVNLQNQQHVLVMCAVAFY
MMENYPLDVGPEFNAGVVQVCSIMLSASEEATPSVIYHCALRGLERLLLSEQLSRMDAET
LVKLSVDRVNMPSPHRAMAALGLMLTCMYTGVPGEEGKERGSPGRPADADPTAPDSESVI
VAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFM
ATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISAL
LPHVISRMGKADPVDVSLFCLVAMDFYRHQIDEELDRRSFQSVFEMVASPGSPYYQLLCC
LQSIHQDTSL
NT seq
9393 nt
NT seq
+upstream
nt +downstream
nt
atggccactatggagaaattaatgaaagctttcgagtcgcttaaatcattccaacaacaa
cagcaaggcccgctgtctgcagaggaacttgttcaaaaacagaaaaaagatctcgcaaca
accaaaaaggaccgagtgactcattgtttgacgatatgtgagaacatcgtagcacagtct
ctgaggacttcgccagagttccagaaacttctgggaatcgcaatggaaatgttcctgctg
tgcagcgatgacaaagagtccgacgtcaggatggttgcagatgagtgtctgaataaaatc
attaaagcattgatggattccaacttgcctcgattgcagcttgagctctataaagagatt
aaaaagaacggtgcctctcggagcctgcgggcggcgctgtggaggtttgctgagctcgct
catctcgtgcgtcctcagaaatgcaggccgtatctggtaaacctgctgccctgcctgaca
cggatcactaagcgccaagaggagacggtgcaggaaactctggcttcctccatccctaaa
atcatggcagcccttgggaactttgccaacgacactgagatcaaggtgattctaaaagcc
tttgtggccaatctgaagtctagctctcctactatccggcgcacggcggctagttcagct
gtcagcgtttgtcagcactcacgcagaaccaactacttctacacgtggctccttaacgtg
ctgctaggtctggtggtgccagtggatgaggaacattcaagccacctgattctgggtgtg
ctgttaaccctgcgctacctgatgcccctactgcagcagcaggatgccagcactagtctg
aaaggcagcttcggcgtcatgcgaaaagaagctgacatctcgcccacgcctgaacagctg
gtccaggtgtacgagctgacgctgcactacacacagcatcgtgaccataacgtggtaact
gcatctctggaacttctgcaacagctcttccgtactccatcacctgagctcctaaacaca
ctcatcattcctggcaaaatcgcacacacccgtgtcttcagagaggagatggagagccgt
gcacgcagcgggagcatcgttgagctcattgctggtggatcaacatccagtccactcgtc
ctcaggaaaccgaaaggaaaaatcctgtcaggggaagaggagggtctggaggatgatcct
gagaaggcagaggtcacgacaggctcctttacagcctctgtgggagcagaaagctccagc
gatgccgcctcctcgtcaggcgtggcatccctcagccaggctgacatcatcacagagcag
ccgcgctcttcccagcatgccctgcagccgggcgactctgtagacctgagtgcttcatca
gaacaagggggcggacctgacacaccggacgacgaagacgaagacatgctgagtcgcagc
tcaagcagtgctgccagggtcgtaggcgccaccaccgacttgcacagtgagaccaatcct
tcagcgggtgcagggtcatcgtcgcctcctagcgacagctcccagaccaccacagagggg
ccggattcggctgtgacgccctcggactgcgctgagctcgtgtttgatggcagtgagagt
cagtactcagggatgcagataggcactctgcaggatgaagaagaggaaggggcagctcct
gcccctgatgaagctccagagactttggctcattctgtgctggcactgagtaagcctcac
ctactggagggtaaaggccacaacagacaagcttctgatagcagtgttgatcgctttata
ccaaaggatgaggttctggagccagtggaccttgataacaagctgtctaggattaaaggg
gacatcggacactacactgatccagcagaggcgccgctgatgcactgtgtgaagctgctg
tctgcctccttcctgctcactggacagagaaacgggctggttcctgataaggaggttcgt
gtgagcgtgaaggctttagctgtcagttgtgtaggtgcagcagcagctcttctccctgaa
accttttttaacaaactctacctggagcccctggatggacaacagacaaatgagcagcag
tatatcagtgacattctgctgtacattaaacacggggatcctcagattagaggagctaca
gccatactgtgtggagctctgatccaagccatcctgctcaagactcgcttcagcaccgag
tcgtggctcacacgtatccacagcaccactggaaacaaagtgtctctggaagacattgta
cccttactacaacgcagtctgaaggatgagtcctcagtgacgtgtaagatggcctgttcg
gctgtgaggcattgtatcatggccctgtgctgcagcagtctcagtgagttgggtctgcag
cttatcattgacctgttgaccctgagggattgctcttattggctggtccgtaacgagcta
ctagaaaccctggcagaagtagactttcggttactgtgctttctagagaggaaaacagag
aagttgcataaaggagagcatcattatacagggttgttgcgactgcaggatagagtcatc
aaggacgtagtgctttaccttcttggtgacgacgatccacgtgtgcgacacgttgcagca
tctatcgtcacgaggctggtgtctaggttgttctatgattgtgaccaggctcaggcagat
ccagtggtggccattgcacgtgatcagagcagtgtctacttgcagcttctaatgcatgag
acccagccaccttctcagtttaccgtcagcaccattacacggacatatcgaggttacagt
ctctcaccgggtgtgtcggatgttacagtggagaacaacctttcccgagtgatcacttcc
atctctcacgcgcttacctcctccacctctagagctctgacttttggctgctgtgaggca
ctatgtctgctatcctttagtttcccagtgtgcacctggagcacaggatggcactgtggt
tttgtcacctcccctgtgtttaactatggacgttccagccagtcccgtagccaagcacgc
tcgtacagcctaactcagagccagagtggcagcagtgaagacagccgcaggtcgttgatt
gtgggtatggccagtatggtactgtccctgctctcttctgcctggttcccactggacctc
tcttcccatcaggatgccttgatactggctggaaatctccttgctgctgctgcaccaaag
tgtatgaaaagcccatggggtggtgaggaagactctggctctgctccctccaaacaggaa
gaggcgtggcctgcgctgagtgaccgttctcttgttgctatggcagagcaattgtttaca
cacttgctaaaagtcctcaatatctgtgcacatgtactggaggacatgtccccaggtcct
gctgtgaaggctagcttgccatcactgaccaacactccatccttgagtccaatcaggcga
aagggtaaagagaaggacatgactgaacccagcaccactccaatgagcccaaagaaagga
ggagagaccaatgcaggcagaccagcggacagcacaggcacagctcctgccagcaaatcc
acctctgtgggcagcttttatcacctgcctccttatctgaagctttacgatgtgctcaag
gccactcatgccaactacaaagtaacactcgacctccataacaccaatgagaaattcggc
agcttcctgcggtctgcgctcgatgttctgtcccagctgatggaactcgccaccctgcac
gacattggcaaatgtgtggaggaaatcctgggatatcttaagtcctgtttctcacgggaa
cccactctagccacagtgtgtgtccaacagctgcttaagaccctgtttgggacaaacctg
gcctcccagtatgacgggacctcctcacacccatgccgttctcaggggaaggctctccgt
ctgggctcatccagcctgcgaccaggcctctatcattattgcttcatggcaccgtataca
cactttactcaggctctcgcagatgccagtttaaggaacatggtacaagccgaacacgag
caagatgcatcagggtggtttgatgtaatgcagaaagtgtccaatcaactgaggtcaagc
atcactaatgtaacacgtcatcgaggagacaagaatgccatccacaatcacattcgtctg
tttgagccgctggtgattaaagcgctgaagcagtacaccaccagcacctgtgtggccctg
cagagacaagtgctggacctgctcgctcagctcgtacagctccgagtcaactactgcctg
ctcgattctgaccaggtgttcattggttttgtgctaaagcagtttgaatacattgaggtg
gggcagttcagggattccgaggcaatcattcccaatattttcttctttctggtgctgctg
tcctacgagcgttatcactccaaacagatcatcagcattccaaagattattcagctgtgt
gatggcatcatggctagtggcaggaaggcggtgacccatgcaatccctgcactacagccc
atagtgcatgacctttttgtgctgcgaggctccaataaggctgatgcaggcaaagagctg
gagactcagaaagaggtggtggtgtccatgctgttgcgccttatacaacatcaccaggtg
ttggagatgtttatcctggtcctgcagcagtgccataaggagaatgaagataaatggaag
aggttgtcacggcagattgctgacataatcctgcccatgattggtaaacaacagatgcac
ctggattctcctgaagcattgggggtgctgaacacactcttcgagacggtggcaccttct
tcattgagaccagtggacatgttactgaagagcatgtttgtcacaccttctacaatggtg
ttagttggcacaatgcagttgtgggtatctggaattctggccattttgcgcgtgttgatc
tcccagtcaacagaggacataattttgtgtcgcgttcaggagctctctctgtctacgttc
cttctgtcctgttccgccatctgccgtcttcacaacaatgaatcatcttctccagctgct
ccaacctctgctgatgcagagaccaatgaagagccacagcgcttccttcctgaagagaca
tttgccagattcctgctgcagttggtaggtgtgttgttggatgaaatctccagtaaacag
gtgaaagtggatatgaccgagcagcaacacaccttctactgccagcagttgggcacgttg
cttatgtgtctcatccacattttcaaatcaggaatgttccgtcgcattacggctgcaggc
agccggctcctgaaggtggaggggacagagggagtgaatttctacacactggaagggctt
aatggcctggtgttgcagctcatcaccacacacccctcactggtgctgctctggtgccag
gtgctgctcatcatcaactacactaactacacctggtggtctgaagtacaccaaactccc
aggaggcacagtttatccagcactaagttgctaagccctcactcgtctggagaggatgag
gagcagaggcctgagggaaagcaggccatgtgtaacagagagattgttcgcagaggagca
ctcattctcttctgtgactatgtgtgtcagaacctccatgattctgagcatctgacttgg
ctgacggtgaaccatgtgagggatttaatcagcctatcgcatgagccgcccgtacaggac
ttcatcagtgcagtgcaccgcaattctgcagccagcggcctcttcattcaggccatccag
tcccgctgtgacaatctctctactccggtgatgctgaaaaagactctgcagtgtctggag
ggaattcacctgagtcaatctggagctctgctcatgctttatgtggacaagttgttgaac
acgcccttccgtgtgctggcccgcatggtggacacacttgcctgcagaagagtggaaatg
ctgctcgctgagactttacagaatagcatagcccagctgccagtggaggagctggacagg
atccaacagtacctccagaccagtggtctagctcagaggcatcagaggttctactccctg
ttggacaggtttcgagccactgttgcagaggaaacaacaagcccttcccctccaattaca
tcacacccactggatgggaatccgccccctgctccagagagtgtcacggccactaaggat
tggtatgtttctctggtgaaatcccagtgctgtgtgagaggtgaaggatctctatttgaa
acaactgacctgctaaccaaactaccccaaactgacttaaatgccatcatgtcctgcaag
gactttaacctgtgcctgctggctccatgtttaagtgtaggcctgcagaggctgtgcaga
gatcagggagcagttctttttgaaaccaccctccaggtgatttttgagcagttggcaagc
attacagcactgctgccctctcctcatcagccactcgtcctctcttcacaacctaacacg
gactcttcttactggaatgcacttagcagtgtgtatggtgaggcaggattttaccagaga
gtgatgagtgtatgtggtgcattaagtcgctacctcctgtctctgcccaaactgccctcg
gctctacagatccctcctgccaccgagcacctgatcacctccttcaccaccctggtcata
gagctggtgacatggcgtttgctacaggaccagttacctctcagtgtagatatgcagatg
agtgtgtcctgcctgtgtttagccctacagcagccatcagtgtgggcagactttgcctct
ctaacctacctcacacacacctgctctattatccactgcattcacctggtaatctatgca
gtcacagttggtccaggtgatcaactagtaaggcagaagagaaagacgcacactgaccga
gactctgaggaggatcaggtggattctgcaaaacgcaacctgggtgagcagcagtgctgt
gagatcatggctgagctagtggaaagcctgcagagtgttttggctcttggtcaccacaga
aacagcaatatcccagcattccttactcctgtccttaggaatgtcatcatcagtctggcc
agactgccccttgttaacagctacacacgcatcccaccaatggtctggaagttgggctgg
tcccccagacggggtggggactttggcacagcactgcctgagattcctgtcgagttcctg
caggagaaagacattttccgagaattcctctaccgcattaatgttctcggctggagcagt
aggacccagtttgaggagacttgggccactctgttaggggtgctggtcacccaaccaatc
acaattgatcaggaggaggagactcaacaagaggaggatctggagcggacgcagataaac
gtgttggcggtgcaggccatcacctccctggtgctaagtgccatgactctgcctacagcc
gggaaccctgcagtcagctgcctggaacagcaaccacgcaacaagaccctcaaagcatta
gacaccaggtttggtcgtaagctcagtgcaataagaggtgtagtggagaaggagattcat
gccatggtgtccaagcgagacaatatagccacacactttccttaccaagcatgggacccg
gtgccttcactgtcctcttcatcagcaggcactttaatcagtcatgagaaactcctcctg
cagattaacacagaaagagaaatgggcaacatggattataaactgggccaggtgtcaatt
cactctgtgtggctgggaaataatatcactcctctaagggaggaagagtggggggatgac
gaggaagatgaaactgatgctcctgcagctgcttcacctccgacatctcctatcaactcc
agaaagcaccgtgctggtgttgacatccactcctgctcccagttcctcctggagctttat
agccagtggatcctcccgggtagccccagcagcagaaaaactccagtgatgcttatcagc
gaggtggtgagatcgctgttggcagtgtctgatctgttcaccgagaggaatcaatttgat
atgatgttttccactctgatggagctgcagaaggttcaccctccagaggatgagatcctc
aaccaatatcttgtgcctgctatctgtaaagcagctgctgttctgggcatggataagatg
accgcagagccagtgtatcggttgttggagtcatcactgaggagcactcatctgcccagt
cgaattggagcactgcatggagtgctatatgtgctggagtgcgatctactggacgataca
gcacgccaacttatacccactgtcagcgaatatgtactgtctaatcttcgggccattgcc
cactgtgtgaacctgcaaaatcagcaacatgtgttagtaatgtgtgctgtggcattctac
atgatggaaaactatccactggatgtcgggccagaatttaacgcaggggtcgtccaggtg
tgtagcataatgctctcagccagtgaggaggccacgccgtctgtaatctaccactgtgca
ctgcgaggcctagagcgattgcttttgtctgagcagttgtcacgcatggacgctgagacg
ctggtgaagctgagcgtggatcgtgtgaacatgccgagcccacaccgcgccatggccgcc
ctgggtctcatgctcacctgcatgtacacaggtgtgcctggagaggaagggaaggagagg
gggagtcctggtcggccggctgacgcagaccccacggctcctgacagcgagtctgttatt
gttgccatggagcgtgtctcagttctttttgaccggatccgtaaaggttttccctgcgaa
gctcgtgtggtcgcacgaatactgccccagttcctggatgactttttcccaccacaggat
gtcatgaacaaagtcattggagagtttctgtccaatcagcaaccttacccacagtttatg
gccaccgtggtttataaggtgttccagactctccatgccactggtcagtcctctatggtg
cgagactgggtgctgctttcactttccaacttcacacagagaacacctgttgccatggca
atgtggagcctttcttgttttttcgtcagcgcctccaccagccagtggatatctgcactc
ctgcctcacgtcatcagtcgcatgggcaaggcagacccagtggatgttagcctgttctgt
ctggtggctatggacttttaccggcaccagatcgatgaagagctggaccggagatccttc
cagtctgtttttgagatggtggcatcgcctggtagtccttactaccagctgctgtgctgt
ctgcagagcattcaccaggacacgtcactatga
DBGET
integrated database retrieval system
