Tachysurus fulvidraco (yellow catfish): 113642480
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Entry
113642480 CDS
T08119
Symbol
ssrp1b
Name
(RefSeq) FACT complex subunit SSRP1 isoform X2
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113642480 (ssrp1b)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113642480 (ssrp1b)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
113642480 (ssrp1b)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
113642480 (ssrp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
SSRP1_C
HMG_box_2
HMG_WDHD1
YABBY
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
113642480
NCBI-ProteinID:
XP_027001819
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All DBs
Position
4:22516839..22529939
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AA seq
697 aa
AA seq
DB search
MSDVLEFSDIYQEVKGSWNDGRLRFSKQMVVYKNSKTGKVDSIPVPELSQAQWRRVCLGH
SIKLSTSTGHVYKYDGFKDTDFEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLS
FEVSDTPVFEIPLSSVSQCTTGKNEVTLEFHQNDDTEVSLMEVRFYVPPSTGDEGADPVE
AFAQNILSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDINLTLNMSEEEVERRFE
GKLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVN
AKKLSIKNRGFKEGMKVRDDMYSDSDEDQHDAYLERMKQEGKIREEANDSDDSEAGSDES
FNPGDEDDDVAEEYDSKASASESSAEGADSEEDRKKKPVKKAKTVKEAKHKKEKKMKDNS
APKRPMSAYMLWLNSSRDRIKAENPGISVTEILKKAGEMWKQISKEKKEEWEGKSEEAKK
EYERAMKQYREKSGGTSKKPRKKGGKSDERKKKKLGGGRERERNKPAGNESFKSPEFISS
EESSSESNRGKGRKRKGSDNEEKQASSTPSSEESVSD
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgttctggagtttagtgacatttatcaggaggtcaagggttcctggaatgac
gggcgtctgcggttcagtaagcagatggtggtttataaaaacagtaagacgggtaaagtg
gacagtatccctgtcccagagctcagtcaggcccagtggaggagggtctgcctgggtcac
agcatcaaactgtccaccagcactggacacgtgtacaaatatgatggctttaaagacacc
gactttgaaaaaatctcggagtattttaaagataattacaaagtggagctgaccgaaaaa
gacatgtgtgtgaaaggctggaactggggcactgctaaattcaatggcccactgctgtca
tttgaagtgagtgacactcctgtgtttgagattccgctgtccagtgtatcacagtgtacc
actggaaaaaatgaagtcactctggagtttcatcagaatgatgatacagaggtgtcgctc
atggaggtgcgtttttatgtcccacccagtacaggagatgagggggcggaccctgtagag
gcatttgcccagaatattctttctaaggcagatgtgattcaggctacaggagacgctgtg
tgtattttccgagagctgcagtgtcttacacccaggggaaggtatgatatacgtatctac
cccaccttcctgcatctgcatggtaagacatttgactacaagatcccctacaccacagtg
ctgcgtcttttcctgctcccccacaaggaccagagacagatgttcttcgtgatcagtctg
gatcctcccattaaacaaggacaaacccgctatcactttctcatcctgctattttccaag
gacgaggatatcaacctcaccctcaacatgagcgaggaagaggtagagaggcgatttgaa
ggaaagctgactaagaacatgtctggctctctatatgagatggtcagcagggttatgaag
gctcttgtcaacaggaagatcacagtacctggaaactttcagggtcactctggggctcag
tgtatcacttgctcctataaggccagctcaggtctgctgtatcctctggagagaggcttc
atctacgttcacaagcccccagtgcatctgcgcttcgaggagatctcctgtgtgaacttt
gccagaggcaccacaaccacacgctcgtttgactttgaaattgagaccaaacagggcagc
cagtacacattcagcagtattgagagagaagagtatgggaagttgttcgattttgtcaat
gctaagaaactgagcatcaagaacagaggcttcaaagagggtatgaaggtcagagatgac
atgtacagtgactctgatgaggatcagcatgacgcgtatctggagcgcatgaagcaggaa
gggaagatccgtgaagaggccaatgacagcgatgactcggaggctggcagcgatgaatca
tttaaccctggagatgaagatgatgatgtcgcagaagagtatgacagtaaagcctcagcc
agtgaaagtagtgctgaaggtgcagacagtgaagaagacagaaaaaagaaacctgtcaaa
aaagccaaaactgtgaaggaggctaagcacaaaaaggagaagaagatgaaggacaacagc
gcccctaagaggccaatgagtgcctatatgctgtggctcaactccagcagagatcgcatt
aaagctgaaaaccctggaatctcagtcactgagattttaaagaaggctggtgagatgtgg
aagcagatcagcaaggaaaagaaagaggagtgggaagggaaatctgaggaagccaagaaa
gaatacgagcgagcgatgaaacagtacagagaaaaaagtggaggcacctcaaaaaagcca
agaaagaaaggaggaaaaagtgacgagagaaagaaaaagaagttaggtggagggagggaa
agagagaggaacaagccagccgggaacgaaagctttaaaagtcctgagttcatctccagt
gaggagagttcgtccgagtccaaccgtggaaaaggccgtaaacgcaagggctcggataat
gaggagaaacaagcaagcagcactcccagctcagaggagtctgtctcagactaa
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