Tachysurus fulvidraco (yellow catfish): 113643085
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Entry
113643085 CDS
T08119
Symbol
rbl1
Name
(RefSeq) retinoblastoma-like protein 1 isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04110
Cell cycle
tfd04218
Cellular senescence
tfd04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
113643085 (rbl1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
113643085 (rbl1)
04218 Cellular senescence
113643085 (rbl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113643085 (rbl1)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
113643085 (rbl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
Rb_C
Motif
Other DBs
NCBI-GeneID:
113643085
NCBI-ProteinID:
XP_047669884
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All DBs
Position
5:complement(25042288..25068324)
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AA seq
1046 aa
AA seq
DB search
MREDESDSDSGRSDEGGSFRSRLETLCQELNIDEETVQEAMGNFTAVWNTYTLEGEVLHW
LACSLYAACRKTWTPTIGSGMVEGNCVSLTRILRSSKLSLIQFFSKMKKWADMSNLSQDF
RNRIRCLERNFEVSTVIFRKFEPIFLDMFQNHQVDPPRQPRGRKHRRLLCHTSDVFKFCW
TLFVYTKGNFHMIGDDLVNSYHLLLCCLDLVYGNALLCNNKKDLINPHFKGLPTDCVSSE
EAPCMLEHLCKLHDGLVVEAKGIKEHYFKPYIRCLFGKKVLKGNKDTLTELLDTPNFQDN
NKAINREYEEYVLTVGDFDERVFLGADANEEIGTPQKITPKPQSSQLSARMQVENNLQQH
FEKTRLLAPSTPLTGRRYLKEKEVLITPVSSATQSVSRLQSMVSGLCNSPSDALLQIFKS
CSRDPTEAILNRVKKLGETFKQAYTKQADDLQGAHMDFAENRLKIAEILYFKILENVMAQ
EIKRLQGKDMTVLLEQDVFHCSLLACCLEVVLFSYSSQRTFPWILETFQLRPFYFYKVIE
VFIRSEDGLSRDMVKHLNVIEEQVLESKAWTKDSVLWEALKDANFKVPTVAEVNFPSSLD
SGRNSISGVPIHLPLVALSPIMHPRLREVRTGIGSSGRKDAPPSPISLHDRFSSPAAGSA
KRRLFGDDAQSPVKRTSVTPLKFIPSPSTENNNQNSSTATVLSMATTNGQQLNIPFPVMN
NDMGSITVIQVQANQLNPLTAQMLLTSPNKAPELHTQPANKPRRTGSLALFFRKVYHLAS
VRLRDLCLKLDISAELRSKIWTCFEQSLVHCTDMMKDRHLDQIMLCAVYIISKISKEEHT
FQDIMKCYRSQPQANSHIYRSVLLRKIVHDQQTDEKMEVDPPTDQTTVRTDPGAKAKADS
ESDEDRGDLIQFYNSVYVLKMKSFALKYAHPAADRVDASQLSPFPSLRAQPLSPRRISQR
HSVYLSPHKNGSCLKPSSAYTYKFTGSPSKELSDINQMIRQGSVSKKRAFTMEGDETESP
TKRLSQESEDVLLKRLQDVVTERANH
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaagacgagtctgattctgactctggcagatcagatgaaggcggttcgtttcgg
agtagacttgaaactctttgtcaggagttaaacatagacgaggagacggtgcaggaggcg
atgggcaactttactgcagtatggaacacatacacactggagggtgaggttttgcactgg
ttggcctgctctctctatgcagcttgtagaaaaacttggactcccactataggtagtggc
atggtggaaggtaattgtgtctctctcacaagaatactacgttcctccaaactcagcctt
atccagttcttcagcaagatgaagaaatgggcagatatgtcaaatctctcacaggacttc
cgaaatcgtataaggtgcctcgagaggaattttgaagtgtccactgtgatctttcgaaaa
ttcgagccaatatttttggacatgttccagaatcatcaagttgaccctcctcgtcagcca
agaggcaggaagcataggcgtcttctctgccacaccagtgacgttttcaagttctgttgg
acgctgtttgtgtataccaaaggcaatttccatatgattggagatgatctagtaaactcc
tatcatctccttttgtgctgtctggacctggtctatggaaatgcgcttctctgtaacaac
aagaaggacctcatcaatccacattttaaaggcttaccaacagattgcgtgagctcagaa
gaggctccctgcatgcttgagcatttgtgcaaactacacgacggtctagttgttgaggcg
aaagggataaaagagcactattttaaaccttacatcagatgtctatttgggaaaaaagtt
cttaagggaaataaggacacgcttactgagttgctggacacaccaaacttccaagataat
aacaaagccataaatcgtgaatatgaagaatatgttctgacggtcggtgactttgatgag
cgggtgtttttgggtgctgatgccaatgaggagattggcacaccacaaaaaattacccca
aagccacaatccagtcagctgtcagctcgaatgcaggtagagaacaaccttcagcagcac
tttgagaagacgcgtttgctggccccttccacgccattaacggggcgtaggtacctgaag
gaaaaggaggtgcttataacaccagtctcttcagctactcaaagtgtgagtcgtttgcag
agcatggtgtctggcctctgcaattctcctagtgatgctctgctccagatcttcaagtct
tgttctcgtgacccaactgaagccattttaaatcgggtgaagaagctaggagagactttt
aaacaggcctacaccaaacaagcagatgatcttcaaggagcccatatggactttgcagaa
aaccgactgaagatagccgaaattctgtattttaaaattctggagaatgttatggctcaa
gagattaagagactccagggtaaagatatgactgtgctattagaacaagatgtgttccat
tgttctcttttggcctgctgtctggaggttgtgctgttttcgtacagttctcaacgaacc
ttcccttggattttagaaaccttccagcttagaccattctacttttacaaggtgatagag
gtgtttatccgctctgaggacggcctttcaagagacatggtgaagcacttgaatgttatc
gaggagcaggtgctggaaagcaaggcttggaccaaagactctgtactgtgggaggcatta
aaggatgctaattttaaagtccctactgtagcagaggtaaattttcctagtagccttgat
tcaggccgcaacagcattagtggggtccccatccaccttcctctggtggctctgtcgccc
atcatgcacccacgtctccgagaggtccgcactggcataggctcaagtggtcgcaaagat
gctcctccatctcccatctctctccatgaccgcttcagttctccagcagcgggcagtgcc
aaaaggcgtttgtttggtgatgatgcacagtctccagtaaagcgaacatccgtcacaccc
ctgaaattcatacccagcccctctacagaaaacaacaaccagaactcatccacagcaact
gttctctccatggctaccactaatggtcagcaactcaacatcccttttccagtgatgaat
aatgacatgggaagtatcacggttatccaggtacaagcaaaccagctaaacccactgact
gcccagatgctgcttacgtccccaaacaaagccccagagctacatacacagccagccaac
aaaccacgccgcacaggatctcttgcactctttttccgcaaggtgtatcatttagcaagc
gtgcgtctcagagatctatgtctaaagctggacatatcagcagagttaaggagcaaaatc
tggacatgctttgagcagtccttggtccactgtacagacatgatgaaggatagacatctg
gatcagatcatgctctgtgcagtctacatcatatccaagatctcaaaagaggagcacact
tttcaagacataatgaaatgttatcggagtcagcctcaagccaacagccatatataccgc
agtgtgctgctgagaaaaatagttcacgatcaacagactgatgaaaaaatggaggttgat
ccaccaacagaccaaaccaccgtcaggacagatcctggtgccaaagcaaaggctgatagc
gaatcagacgaggacaggggtgacctcatccaattctacaattctgtttatgttttgaaa
atgaaatcttttgcactcaaatatgctcatccagcagctgacagagtggatgcatcccag
ttatctccattcccctcactgagagctcagcctctttccccacggcgaatatctcagaga
cactctgtctacctgtctcctcacaaaaacggttcctgcctcaaacccagctctgcttac
acatacaagtttactggcagtccatctaaggagctgagtgacatcaaccaaatgatccgt
cagggaagtgtgagcaagaagagagcttttaccatggagggagatgagaccgagtctccc
accaaacgtttgagccaagaaagtgaggatgtgctgctcaaacgtctacaggatgttgtg
actgagagagccaatcactga
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