Tachysurus fulvidraco (yellow catfish): 113643196
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Entry
113643196 CDS
T08119
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfd04121
]
113643196 (pdzrn3b)
Enzymes [BR:
tfd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113643196 (pdzrn3b)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
113643196 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
Prok-RING_4
zf-TRAF
TRAF3_RING
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
zf-RING_6
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
113643196
NCBI-ProteinID:
XP_027003100
LinkDB
All DBs
Position
5:complement(23233745..23322889)
Genome browser
AA seq
1048 aa
AA seq
DB search
MGFELERFSGAVDPDLKCNLCHKVLEEPLTTPCGHVFCAACVLPWVAQQRSCPAQCRRRV
SAQELHHVPPLKSLVLKLDIRCEYHARGCRQVVKLQQLSEHAETCDFAPARCRNEGCSQV
FNLKDVHLHMRDACEYRPAGICEQGCGLGLTHRERYQDGHCCVRALKAHNSALQAKVSSL
EKECKKQAMRACKREKSLLAQLSSVHNELEMTALRYQKKFTEYSAHIDSLTKSFASPAKV
GESKSVTVVLHRESGSLGFNIVGGRPCADNEDRTSNEGIFVSKIVEHGPVDKDGGLQIHD
RIMEVNGKDLSNATHEQAVEAFRAAKEPIMVQVLRRKPKLAGPEGDAQLLDISTQTDITF
QHIMALSKLPASTPPVLDQYILPEGHPSGHEYFDPNDYLETMQQDMEREELEYEEVDLYR
TNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAARDGRIREGDRIIQINGIEVQNREEA
VALLTSEENQNVCLLVARPEIQLDDGWMEDDRNDFLDDLHMDMLEQQHHQAMQFTASMLH
QNKPVEGGGMMDTGTLLSQQHEKDSGVGRTDESTRNDESSEQENLCDDQTSASTTLGSRR
RLAYSQDTLGSSDLPFSNESFISADYTDADFLGEFPADECERFRELLELKCQVRSGGGLA
ISWPSFGVDGRQGFCGAGDDDVDKELELLNAELRNIELECLSIVRAHRTQQLREQPWMLH
NSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRA
SEGLAETSAGGTVTGTVTNARAPRSMLSPVQESSGSSRSHTAPLKEPDAGHHSEAKERKP
NRLSQPHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQLSLASMCRDPVSAEPKAEW
KVKIRSDGTRYITKRPARDRLLKERALRIREERSGGMTTDDDAASELKMGRYWSKEERKQ
HAVRAKEQRQRREFMKQSRTDWLKEQSGSGPDDKKEVNIIELSHKKMMKKRNKKIFDNWM
TIQELLTHGARSPDGTRVYNSLLSVTTV
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagttggagcgctttagcggcgcagtagatccggacctgaagtgtaacctc
tgccacaaagtgctagaggagcctctcacgacgccgtgcggccacgtcttctgcgcggcg
tgtgtgttgccttgggtggcgcagcagcgcagctgtccagcgcagtgccggcggcgcgtg
tcggcccaggagttgcaccacgtgccgccgctcaaaagcctcgtgctcaaactggacatc
cgctgcgagtatcacgcacggggctgccgccaggtcgtcaaactccagcagctctccgag
cacgcagagacgtgtgactttgcccccgcgcgctgccgtaacgaaggctgcagccaggtg
ttcaacctcaaggacgtgcacttgcacatgcgcgacgcctgcgagtaccggccggctggc
atctgcgagcagggctgcggactcggtcttactcaccgagagcgctatcaggacggtcac
tgctgcgtgcgcgcgctcaaggcgcacaacagcgcgctgcaggccaaagtctccagcctg
gaaaaggagtgtaagaagcaggcgatgcgcgcgtgcaaacgggagaagtcactgctggca
caactctctagcgtgcacaacgagctggaaatgactgcgcttcgttaccagaaaaagttc
accgagtacagcgcgcacatcgactctctcaccaagagctttgcctcgccagctaaggtt
ggcgagagcaaaagcgtcacagttgtgcttcacagagagtctggatctttggggtttaat
attgttggagggcgaccatgtgcggataatgaagacaggacttcaaatgaaggcatcttt
gtatcaaagattgtggagcatggaccagtggataaagatggaggtcttcagattcatgac
cggataatggaggtaaatggcaaagacctgtccaacgctacacatgagcaggcagtagag
gccttccgtgcagccaaagagcctatcatggtgcaggtgttgcgcaggaagcccaaactg
gccggacctgaaggggatgcacagctgttggacatcagtacacagacagacatcaccttc
cagcacattatggctctcagcaagctgcctgcctcaacacctcctgtacttgatcagtac
atcttgcctgaaggacacccttctgggcatgaatatttcgacccgaatgattacctagag
accatgcaacaagatatggagagagaggaactcgagtatgaggaagtggatttgtacagg
acaaatatccaggacaagttgggcttgactgtatgctataggactgatgatgaggatgaa
actgggatatatgtcagtgagattgatccaaacagcattgctgcaagagatggtcgaatc
agagaaggggacagaatcatccagatcaatggcatagaggtgcagaatcgggaggaggca
gtggctctgctgacgagcgaagagaaccagaacgtgtgcctgctggtggctcggccagag
atacagctcgatgacggatggatggaagatgacagaaacgatttcctagatgatctgcac
atggacatgctcgagcagcagcatcatcaggccatgcagttcactgccagcatgcttcac
cagaataaacctgtggagggtggaggcatgatggacacaggaacactgctctcacagcag
cacgagaaggacagtggtgtgggccgcacagatgaaagcacccgcaacgacgagagctca
gagcaggagaacctctgtgatgaccagaccagtgcctctaccacactgggtagtcgcagg
cgtctggcctacagtcaggacacactgggaagcagtgaccttcccttcagcaatgagtcc
ttcatctcagccgactacactgatgcagatttcctgggtgaattcccagctgatgagtgt
gagcgcttcagggagttgttggagcttaaatgccaggtgaggagtgggggtggcttggcc
ataagctggcccagctttggtgtagatggcaggcaaggattctgtggtgcaggggatgat
gacgtggacaaggagctagagcttcttaatgcagagctgcgtaacattgaactagaatgc
ctcagcattgtgcgggcacaccgtacgcagcagttacgtgagcagccatggatgttgcac
aacagcggctttcgcaattacaacacaagcgtggacgcacggcgccacgaactggctgac
atcagcgagctccccgagaagtcagacaaggatagttcaagtgcctataatacaggagag
agctgccgaagcacaccacttaccctagagctctcaccggacaactctttacgccgggcc
agtgaagggcttgcagaaaccagtgcaggaggtactgtaacaggtactgtaactaatgcc
agagccccgaggtccatgctgtcacctgtccaagagtcttctggatcaagcaggagtcac
actgctcctctgaaagagcctgatgctggccaccattctgaggccaaagaacgcaagccg
aatcgcctcagccagccacattctccctacaagcatgcccacatcccagcacatgctcag
cattatcaaagctacatgcacttgattcagcaaaagtcagctgtggagtacgcacagagc
cagttgagtcttgccagcatgtgccgtgatcctgtctctgccgagcccaaggcagagtgg
aaggtgaagatccgcagcgatggtacccggtacatcaccaaaaggccagcacgtgaccgc
ctgttaaaggagcgtgccctgcgcatacgagaggaacgcagcggaggaatgaccacagac
gacgacgcagccagtgagctgaagatgggccgctattggagcaaggaggagcgtaagcaa
catgctgttcgtgccaaggaacagcgccaacgtcgagagttcatgaagcagagtcgtaca
gactggctgaaggagcaaagtgggagtggccccgacgacaaaaaggaggtcaacattatt
gaactaagtcacaaaaaaatgatgaagaagcgcaacaagaagatcttcgataactggatg
accatccaggaactgctcacgcatggtgcgaggtctccagatgggacacgagtgtacaac
tcactgctgtcagtaactacagtgtga
DBGET
integrated database retrieval system
