Tachysurus fulvidraco (yellow catfish): 113643253
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Entry
113643253 CDS
T08119
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
KO
K14298
mRNA export factor
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113643253 (rae1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113643253 (rae1)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113643253 (rae1)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113643253 (rae1)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113643253 (rae1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_EML_2
Beta-prop_WDR3_1st
WDR55
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
eIF2A
Beta-prop_IFT140_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_ACSF4
Beta-prop_SPT8
ExoI_SH3
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
113643253
NCBI-ProteinID:
XP_027003211
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All DBs
Position
5:complement(16530721..16536743)
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AA seq
369 aa
AA seq
DB search
MSLFGSSSGFGAGGTGVFGTTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTLPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHEGPIRTIHWIKAPNYNCVMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCSDVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNNNGNIFAYSSSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgttcggttcaagttctggatttggggccggaggcacaggtgttttcggcacc
accacaacagacagtcataatccaatgaaggatgttgaagtgacatcaccaccagatgac
agcatcagctgcttggcctttagtcctccaacattgcctggaaactttttgattggtggc
tcttgggccaatgatgtgagatgctgggaagttcaagataatggccagacagtccctaaa
gctcagcagatgcacacaggccctgtgctggatgtttgctggagtgatgatggaagtaaa
gtctttacagcctcctgtgacaaaactgccaaaatgtgggatctgaacagtaaccaggcc
atgcagatagcacaacatgaaggtccaatcaggacaatccactggataaaagcaccaaac
tacaactgtgtgatgactggcagttgggacaaaacgctgaaattttgggacacccgctct
ccaaaccccatgatgtctctgcagatgcctgagagatgttactgctctgatgtggtgtat
ccgatggctgtggtggccactgcagaacgagggttaattgtgtaccagttggagaaccag
ccatctgaattccggcgtatagattcacctctgaaacatcagcaccgctgtgtggccatc
tttaaggacaaacaaaataaacccactggatttgcactgggcagtattgagggacgagtg
gccattcactacattaacccacccaaccccgccaaggataatttcaccttcaagtgccat
agatctaatggaacaaacaccaccacaccccaggatatttacgctgtcaatgccattgct
ttccatcctgtgcacggcacgttggccacagtgggctcagacggccgattcagtttctgg
gataaggacgctcgcacaaagctgaaaacctctgagcagcttgatcagccaatcacagct
tgctgcttcaacaacaatggcaacatatttgcctacagctccagctatgactggtccaag
ggacatgagtactacaacccccagaagaagaactacatttttctgcgaaatgctgctgag
gaactcaagcctcggaacaagaaatggtga
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integrated database retrieval system