Tachysurus fulvidraco (yellow catfish): 113643384
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Entry
113643384 CDS
T08119
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113643384 (ddx1)
03016 Transfer RNA biogenesis [BR:
tfd03016
]
113643384 (ddx1)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113643384 (ddx1)
Spliceosome [BR:
tfd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113643384 (ddx1)
Transfer RNA biogenesis [BR:
tfd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113643384 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
113643384
NCBI-ProteinID:
XP_027003398
LinkDB
All DBs
Position
9:21528277..21542385
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AA seq
740 aa
AA seq
DB search
MAAFEEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVFETLKDQQEGKKGRSAVKTGGAVFNKWQMNPYDRSSAFAIGPDGLCCQSREFKEWH
GCRSTRAVTKGKYVYEVSCHDQGLCRIGWSTSQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDMESGHVSFSKNGNDLGLAFEIPQNLKNQPFFASCVLKNAELKF
NFGGEPFKHAPKKGFVAVDQAPDGHVVKTTQTGSATVSQVKTSSNSPKALILEPSKELAE
QTLNNIKQFKKHVDNPKLQDLLIIGGVAAKEQLSILESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGYTDFIMRVYNKIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSIPETVHHVVVPVNPKKDKLWERLGKNHIRTDEVHTKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYLIAQGGGPEKKGHQF
SCVCLHGDRKPNERKYNLEQFKKKEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKDEGGCTIWYNEKELLG
DIEDHLKCTITQCEPDIKVPIDEFDGKVTYGQRRAVGGGLCKGHVDILAPTVQELANLER
EAQTSFLQLSYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtttgaagaaatgggcgtgatgcctgaaatcgctcaggccgtggaagagatg
gactggttgcttcccaccgacatccaggccgagtccattcccctgatactcggtggagga
gacgttctcatggccgctgagactgggagtggcaaaactggggccttcagcatcccagtg
atccagatcgtgttcgagactctgaaagatcagcaggaggggaaaaaaggccgtagtgcc
gtcaagacaggaggagcagtctttaataaatggcagatgaacccgtacgaccgaagctca
gcgttcgctatcggtcctgacgggctttgctgccagagcagagagtttaaggagtggcac
ggctgccgatccacaagggccgtgactaaaggaaagtacgtttatgaagtctcctgccac
gaccagggcttgtgcaggatcgggtggtccactagtcaggcatcgctggacttgggtacc
gacaagttcggctttggcttcggtgggacggggaagaaatcccacaataagcagtttgat
agttatggagaggagttcactatgcacgacaccatcggctgttacatcgacatggaaagt
ggccatgtgtccttctccaaaaatgggaatgatctgggcttggccttcgagatcccccaa
aacttgaaaaatcagccgttctttgcttcctgtgtgcttaagaatgctgaactgaagttt
aattttggtggagagccttttaaacatgcccccaaaaaagggttcgttgctgtggatcaa
gcgcccgatggccatgtggtcaaaaccactcagactggcagtgccacggtgagtcaggtc
aaaacaagctccaactcccctaaagcgcttatcctggagccgtccaaagaactggccgag
cagaccctcaacaacatcaagcagtttaagaaacacgtggacaatcccaagctacaagat
ctgctgatcatcggaggtgtggcggccaaagagcagctctccattctggaaagcggggtt
gatatagtggtcggcacacccggcagactcgacgatctcatatccacaggaaaactcgac
ctctcccaagtccgcttcctggttctggatgaatgtgatggactcctttcagccggctac
accgacttcatcatgagggtctacaacaaaatcccccaggtcacctcagatggaaagcga
ctgcaggtgatcgtgtgctcggccaccctgcactcgttcgacgtcaagaagctgtcggag
aagatcatgcactttcccacgtgggtggatctgaaaggtgaagactccatacctgagacg
gtgcatcacgtggtggtgccagtcaaccccaaaaaggacaagctctgggaaagactgggc
aaaaaccacatccggaccgacgaagtgcatacgaaagacaacacaaggccaggagccaac
actccagagatgtggtcggaggcgatcaaaatcctgaagggcgagtacacggtccgtgca
attaaggagcacaagatggaccaagccatcatcttctgcaggacgaagattgactgcgac
aacatggagcagtacctgatcgcacaaggaggaggccctgaaaagaaaggacatcagttc
tcctgtgtctgtcttcacggtgaccggaagcccaacgagcgcaaatacaacctggagcag
ttcaagaaaaaggaagtgaggtttttgatttgcaccgacgttgcagccagaggaatcgac
atccacggcgtcccatacgtcattaatgtgactttgccggatgagaagcagaattacgtg
catcgcatcggaagagtgggccgtgcagagaggatgggtctggccatttccctggtagct
atggaaaaggagaaggtatggtaccatgtgtgtcctaacagaggccgaggctgctataac
accaggttaaaggatgagggaggctgcactatatggtacaacgagaaagagctgttggga
gacatcgaggaccatctgaagtgcaccattactcagtgtgagccggacatcaaagtgccc
atagacgaatttgatggcaaggttacttacggccagcgccgagctgttggaggtggtctc
tgtaagggtcatgtggatattttggctcctaccgtccaggagcttgctaacctcgaacga
gaagctcagacctctttcctacaactcagctatctccccaaccagctctttaaagccttc
tga
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