Tachysurus fulvidraco (yellow catfish): 113643419
Help
Entry
113643419 CDS
T08119
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113643419 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113643419 (prpf8)
Spliceosome [BR:
tfd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113643419 (prpf8)
Complex C
U5 SnRNP specific factors
113643419 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113643419
NCBI-ProteinID:
XP_027003478
LinkDB
All DBs
Position
11:14985516..14999707
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPGGMPPGVPPPVPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPEEDSSVVDWFYEHQPLKDTTKYVNGVTYRHWRFSLPMMST
LYRLANQLLTDLVDRNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDLNLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPECVEPFLKETPLYSDNTANGIALLWAPRPFNLRSGR
TRRALDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREILRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
PTEIAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPSQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctacatttccttacagaggagtcccaggtgggatgccacccggtgttcctcct
cctgtccctgttcctgattacatgactgaggaaaaactgcaagaaaaagcccgaaaatgg
cagcagctgcaggccaagcgctactccgagaagaggaaatttggttttgtggatgctcag
aaggaggacatgcctcctgagcatgtgcggaaaattatcagagaccatggagacatgacc
aacaggaagttccgtcatgacaaaagagtctaccttggtgctctgaaatatatgcctcat
gccgttctcaagctgttggagaacatgcccatgccctgggagcagatcagagatgtacca
gttctgtaccacattacaggggctatttcatttgttaatgaaattccctgggtcattgag
cctgtctacattgctcagtggggtacaatgtggatcatgatgcgacgtgagaaaagagac
aggcgacacttcaagcgcatgcgtttccctccttttgatgatgaagagcctcccctggat
tatgcagataacatccttgatgtggagcctctggaggccattcaaatggagctggaccct
gaagaggacagctctgtggtggattggttttatgagcatcagcccttgaaagatacaaca
aagtacgtcaatggagttacatacaggcattggcgtttcagtttgcccatgatgtctaca
ctgtatcgtttggccaatcagctgcttactgatttagtggaccgtaactacttttatcta
tttgacctgaaggccttcttcacttcaaaggcattgaacatggccatacctggaggaccc
aaatttgagcccctagtcagggacctcaatctacaggatgaagactggaatgagtttaat
gacatcaacaagatcattatcagacagcctattaggacagagtacaagattgcgttccca
tacttgtacaacaaccttccccatcatgtgcacctcacttggtaccacacacctaatgtg
gtgttcatcaagacggaggatcctgatttgcctgccttctactttgacccacttatcaat
ccaatctctcacaggcactcagttaaaagccaggagccactgcctgatgatgatgaggag
tttgaacttcctgagtgtgtggagcctttcctcaaagagacacctctgtattctgacaac
accgccaacggaattgctttgctgtgggcacctcgtccgttcaacctgcggtcagggaga
actcgtcgtgcactcgacgttcctctcatcaagaactggtaccgtgagcattgccctgca
ggacagcccgtaaaagttcgtgtctcttatcaaaaacttctgaagtactatgtgctcaat
gctttgaaacacagaccacctaaagcacagaagaagaggtaccttttccgttcattcaag
gccaccaaattctttcaatccacaaagttggactgggtggaggttgggctccaggtctgc
cggcagggttacaacatgctgaacctgctgattcacagaaaaaacctcaactacctgcac
ttggactacaacttcaacctaaaaccagtgaaaaccctcaccacaaaagagcgtaagaag
tcccgtttcgggaatgcgttccacttgtgccgtgagattctgcgtctgagcaaactggtt
gtggatagccatgtgcagtacagactggggaatgttgatgccttccagttggcagatggg
ctgcagtatatctttgcccatgttggtcagctgactggcatgtatcgctacaagtacaaa
ctgatgaggcagatcaggatgtgcaaggatttgaagcatctcatttattatcgtttcaac
actggcccagttgggaagggtccaggttgtggcttctgggctccaggatggagagtgtgg
ctcttcttcatgaggggcatcactcctctcctggagagatggctgggtaacctgttggcc
aggcagtttgaaggtcgacactccaagggagttgcaaagactgtaactaaacagcgtgtg
gagtctcactttgacttggagctgagagcagctgtgatgcacgacatcctggacatgatg
ccagagggaatcaaacagaacaaggccaggaccattttgcagcatctaagtgagtcctgg
aggtgctggaaggccaacatcccctggaaggttccaggacttcccactcctattgaaaac
atgatcttgagatatgtcaaggccaaagctgactggtggaccaacacagcacattacaac
cgagagcgaatcaggcgcggagcaactgtggacaaaacggtctgcaagaaaaaccttggc
cgcctcacacgactctacctgaaggctgagcaggagagacaacacaactacctaaaggat
ggaccgtacatcactgctgaagaggctgtggctatctacaccaccacagtgcactggctg
gagagtcgacgcttctctcccattccatttccccctctctcatacaaacatgacaccaag
ctgctcatcctggctctggagaggctcaaagaggcttacagtgtgaagtcaaggttgaat
cagtcccaacgtgaagagctgggtctgattgaacaggcttacgacaatcctcatgaggct
ttgtccagaatcaagcgtcatctcctcacacagagagcattcaaagaagtgggcatcgag
tttatggacctatacagtcaccttgtgcctgtatatgatgtggagcccctggagaagatc
acagatgcatacctggaccagtacttgtggtatgaggctgacaagcgcaggcttttccca
ccatggatcaaacctgctgacacggagccacctccattgcttgtatacaagtggtgccaa
ggcatcaacaacctgcaagatgtgtgggagaccacagaaggagagtgtaatgtcatgctg
gagtcacgatatgagaagatgtacgaaaagattgacttgactctacttaacaggcttctg
cgtctgatcgtcgaccacaacattgctgattacatgacagcaaagaacaacgtggttatc
aattacaaggacatgaaccacaccaactcgtatggcatcattaggggcttgcagtttgcc
tccttcattgtgcagtactatgggttggtgatggacctgctcgttctgggtcttcatcgt
gctagtgagatggctggacccccacagatgcccaacgatttcctcagcttccaggacagc
cctacagagattgcccaccccattcgcctgtactgcagatacatcgaccgcatccacatg
ttcttcaggttttctgctgatgaggccagggatcttatccaacgataccttaccgagcat
cctgatcccaacaatgagaacattgtaggctacaacaataagaagtgctggcccagagat
gctaggatgagactgatgaagcatgatgttaacctgggccgtgccgtgttttgggacatt
aagaaccgccttcctcgctctgtgaccactgtgcagtgggagaacagctttgtgtccgta
tacagtaaagacaaccctaacctgctcttcaacatgtgtggatttgagtgccggatcctg
cccaaatgccgcactagttatgaggagttcactcacaaggatggggtgtggaacctgcag
aatgaggtaacgaaggaaaggacagcgcagtgcttcctgcgagtggatgatgaatcaatg
cagaggttccataacagagtgcgacagattctcatggcctctggatccaccactttcacc
aagattgtgaacaaatggaacactgctctgattggtctgatgacctacttccgtgaggct
gtggttaacactcaggagttgcttgatcttttggtgaaatgtgaaaataagatccagaca
cgtatcaagattggtctgaactccaaaatgcctagccgtttccctcctgtggtcttctac
acacccaaagagttaggaggtctgggcatgctttctatgggtcatgtgctcatcccgcag
tctgacctcaggtggtccaaacagacagacgttggcatcactcacttccgttccggtatg
agtcatgaggaggatcagctgattcccaatctgtatcgctacatccagccatgggagagt
gagttcattgattctcagagagtctgggctgaatatgctctcaagagacaagaggccatt
gctcagaacaggcgtttgactcttgaagatttggaggattcctgggacagaggtattcct
cgcatcaacaccctgttccagaaagacaggcacacactggcctatgacaagggctggaga
gtcagaaccgacttcaagcagtatcaggtgctgaagcaaaatccgttctggtggactcac
cagagacacgatggcaaactgtggaatttgaataattaccgcacagacatgatccaagca
ctaggtggagtggaaggaattttggaacatactctcttcaagggtacatactttcccacc
tgggagggtctgttctgggagaaggccagtggttttgaggagtccatgaaatggaagaag
ctgaccaatgcccagagatctggtctgaaccagatccccaatcgacgattcactttgtgg
tggtctccaaccatcaacagagcaaatgtgtatgtgggtttccaggtgcagttggatctc
actggaatcttcatgcatggcaaaattcccactctcaagatctccttgatccagatcttc
agagctcacttgtggcagaagatccatgagagcattgtcatggatctgtgtcaggtgttt
gaccaagagctggatgccctggagattgaaactgtccagaaggaaaccatccatcctagg
aagtcttataagatgaactcctcttgtgcagatattctgctttttgcatcctacaagtgg
aacgtctcaagaccatcactgcttgctgattccaaggatgttatggacagcaccaccact
cagaagtactggattgacattcagctcagatggggagactatgactctcatgacattgag
agatatgctagggccaagtttctggactacaccacagataacatgagtatatacccatca
cctactggggtgctcattgccattgatctggcatacaatctgcatagtgcctatggaaat
tggttccctggcagtaagcctctgatccagcaagccatggctaagatcatgaaagccaac
cctgccctgtatgtgctgagggagcgcatccgcaagggtctgcagctctactcctccgag
cccactgagccctacctgtcctcgcagaattatggagagctcttctccaatcaaatcatc
tggtttgtggatgacaccaatgtgtacagagtcaccatccacaagacctttgagggcaac
ttgacgacaaaaccaattaacggggccattttcatctttaatccaagaactgggcaacta
ttcttaaagatcattcacacatccgtgtgggctggacagaaacgtctgggacagctggca
aaatggaaaactgctgaggaagtggctgctcttattcgatcgctgcctgttgaagagcag
cccaaacagatcattgtgacaaggaagggcatgttggatcctcttgaggtgcacttgttg
gatttccccaacattgtcatcaaaggctctgagctgcagttgccattccaggcttgtcta
aaggtggaaaagtttggggacctcattctgaaggccactgagccacagatggtcctgttc
aatctgtacgatgactggctcaagacaatttcttcttacactgccttctcacgtctcatc
ttgatcctgagagccctccatgtgaacaacgaccgtgcgaaggtaatcctgaagcctgac
aaaaccaccatcactgagccacatcacatctggcccactctgactgatgaggagtggatc
aaggtggaggtgcaacttaaagatctcatcttggctgattatggtaaaaagaacaatgtg
aatgtggcttctctgacacagtctgagatcagggacatcatactgggtatggagatctct
gctccatctcagcagaggcagcagattgctgagattgagaagcagactaaagagcagtct
cagctaacagccacacagactcgcacagttaacaagcatggtgatgaaatcattacatcc
accaccagcaactatgagacccaaaccttctcttcaaagactgaatggagggttagggct
atctctgcagccaacttgcacttacgtaccaaccacatctatgtgtcatctgatgacatc
aaagaaactggatacacttacattctccctaagaatgtgctgaagaagttcatctgcatc
tctgacttgcgtgctcaaattgctgggtatctgtatggtacaagtcctcctgataaccca
caggtgaaagaaattcgctgcattgtgatggtgccacaatggggcacccatcaaactgtc
cacctgcccagtcagcttccacagcatgaatatctcaaggaaatggagccacttggttgg
atccacacacaacccaatgaatcgcctcagttgtctccccaggatgtcaccacacatgct
aaagtcatggctgataatccatcctgggatggagaaaagaccatcattattacctgcagt
ttcactccaggatcttgtacattgacagcttataagctgactcctagtggatatgagtgg
ggcaggcagaacacggataagggcaacaatcccaagggttatctgccatctcactatgaa
agggtgcagatgctgctgtccgatcgcttccttggcttcttcatggtgccaggtcaagtg
tcttggaactacaatttcatgggtgttcgacacgaccccaatatgaaatacgaactgcag
ctgtccaacccgaaagagttttatcacgaggttcacaggccttctcacttcctaaatttt
gcatcgctgcaggagggtgagatctacaacgctgaccgagaggatatgtacggttag
DBGET
integrated database retrieval system
