Tachysurus fulvidraco (yellow catfish): 113643510
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Entry
113643510 CDS
T08119
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030
DNA replication
tfd03420
Nucleotide excision repair
tfd03430
Mismatch repair
tfd03440
Homologous recombination
tfd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113643510 (rpa1)
03420 Nucleotide excision repair
113643510 (rpa1)
03430 Mismatch repair
113643510 (rpa1)
03440 Homologous recombination
113643510 (rpa1)
03460 Fanconi anemia pathway
113643510 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113643510 (rpa1)
03032 DNA replication proteins [BR:
tfd03032
]
113643510 (rpa1)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113643510 (rpa1)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113643510 (rpa1)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113643510 (rpa1)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113643510 (rpa1)
MMR (mismatch excision repair)
113643510 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
113643510 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Por_Secre_tail
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
113643510
NCBI-ProteinID:
XP_027003594
LinkDB
All DBs
Position
11:complement(10395132..10426534)
Genome browser
AA seq
610 aa
AA seq
DB search
MTVKLSEGAIEALIKGKEVTNPILQLINIRKLDSGNGPVRFRLMMSDGLHTMSSFMLATP
LNSLAEQNLVAPNCVCLLKKSVTNVLKDGRTVVIILDLEVIKPADQMAGKIGDPTPYVEG
QSKAPQTVPAHAPSASPATSAGSSRPLQPQNGGSMNRGSSRDFGKKPMTAPSTPGGTSKV
VPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDK
FFSLIEQGKVYYISKGTLKIANKQFTSLKNDYEMTLNGESTIIPCDDSSDVPMVQCDFVS
IADLDARDKDAIVDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGKIIQVTMWGNEA
ETFDGTGQPILAIKGARLSDFGGRSLSTLYSSTLMINPDIPEAYKLRGWYDKEGHALDGQ
SMTEMRGGGGGGPTNWKTLADVKNEHLGHGDKADYFTCIATIVYMRKENCLYQACPSKDC
NKKVVDQQNGMYRCEKCDKEFPEFKYRLMLSANVADFGDNQWVTCFQDTAETILGQKSDY
IGQLRDSNEAAFDEVFQHANFSTFVFRNRVKLETYNDESRIKVTVVEAKPVDHKEYSKRL
IMSIRKHAAH
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaaattgtccgagggcgcaatcgaggccctgattaaagggaaagaggttaca
aacccaattcttcagctgattaatattcgaaagctcgattcaggtaatggaccagttcgc
tttcgcctcatgatgagcgatggccttcacaccatgtcctccttcatgcttgccacccct
ctgaactccctggctgaacaaaaccttgtggctcccaactgtgtgtgcttgctgaagaaa
agtgtcaccaatgttctaaaggatggacgcactgtagtaattatcctggacctggaggta
attaaacctgcagatcagatggcaggaaaaatcggagacccaactccttatgttgagggt
caatccaaggctccacagactgttcctgctcatgctccatctgcttctccggctacttct
gctggttcctcacgtccactgcagccacaaaatggaggctccatgaatagaggctccagt
cgtgattttggaaagaagcctatgacagctcccagcacaccaggaggcacttcaaaagta
gtgcctattgccagccttaatccctaccagtcaaaatggaccattagagcacgagtgacc
aacaagagcgccattcgtacctggagcaactctcgaggggatgggaagctcttctccatg
gagattgttgacgaaagtggagaaattagagtgactggttttaatcaggaggtggacaaa
ttcttctccctgatcgaacaggggaaggtgtactacatctctaagggcactctgaagatc
gccaacaaacagttcacatcccttaagaatgactatgagatgaccctgaacggcgagtcg
accatcatcccctgtgacgacagctctgacgttcccatggtgcagtgcgactttgtctcc
attgctgatttggatgctcgggataaggacgccattgtggatgtgatcggtgtgtgtaag
agtgtggaggatgtgacacggattacaactaagaacagtcgcgaggtttccaagaggaac
attcagctgatggatatgtctggcaaaattatccaagtcaccatgtggggaaatgaggca
gagacatttgatggcaccggacagcctatcttggcaataaagggtgccagactctcggat
tttggagggcgctctctttccactctctacagcagcacactgatgattaaccctgacatt
cctgaggcatacaaactgcgaggctggtatgataaagagggtcatgccctagatggtcag
tctatgacagaaatgagaggaggaggcggcggaggccccactaactggaagactttggca
gatgtcaaaaacgaacacctgggtcacggcgacaaggctgattacttcacctgtatcgcc
accattgtgtacatgaggaaggagaattgtctgtatcaggcttgtcccagcaaggactgc
aacaaaaaggtggtggaccagcagaatggaatgtaccggtgtgagaagtgtgacaaagag
tttcctgaattcaaatatcgtctcatgctctctgcaaatgttgcagattttggagataac
cagtgggtgacatgctttcaggacactgctgagaccatcctgggccagaaatctgattac
attggccaactcagggactctaatgaggccgcttttgatgaggtcttccagcatgccaat
ttcagcacttttgtctttcgcaaccgagtgaaattggagacctacaatgatgaatctcgc
attaaagtaacggtggtggaggccaagcctgtggatcacaaggaatacagcaagaggctg
atcatgagcatcaggaaacatgcagcacattag
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integrated database retrieval system
