Tachysurus fulvidraco (yellow catfish): 113643670
Help
Entry
113643670 CDS
T08119
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like isoform X2
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04137
Mitophagy - animal
tfd04140
Autophagy - animal
tfd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113643670 (hif1al)
04137 Mitophagy - animal
113643670 (hif1al)
04148 Efferocytosis
113643670 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113643670 (hif1al)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
113643670 (hif1al)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
113643670
NCBI-ProteinID:
XP_027003847
LinkDB
All DBs
Position
11:complement(9892221..9905788)
Genome browser
AA seq
623 aa
AA seq
DB search
MTTSVGKRPSTELRKVRLRDAARCRRSQETEVFYELAHSLPLTRRITSHLDKAGIMRVTL
SYLRMRQLLQSSGTKATPAEEEEEDPIDTFYQQALAGFIMVMSEDGDMVFLSENVSKFIG
ITQLELLGQSVYDYVHPCDQEELRDLLTTKPGLFKKKSDSCTECNFFLRLKSTLTSRGKT
VNIKSATWKVVHCIGYLKTLNQEGEDSSPAGSYMTLLCEPIPHPSYVEFPLDSNTFLTRH
NMDLHFNHCDDRVTELVGYHPSDLIGRSVYDFFHALDFDHLTRSLHILISKGQVCTSHYR
FLAKNGGFVWTETQATVLYNKKTTQPEAVVCLNFILSAVEEADTVFSIEQTRSDSMEDKP
SVITVDDSEDEMSSSSSSSSSELFHRLKDNPEDLLQLAPAPGDTIIPLTEHSELFFGRPS
SPNTLPTCPKELCTPKLRQLLSPIFDNPDSSELSSSDEILMDTGDVEKFFCKPEETQKKP
MEDMDDMDLDMLAPYISMDEDFQLTFLPQLPEAETQTDVSTTASKKRGLEEEEDVPSLTS
NWEKRQKNSPIEEEFLLTHSSLIQVAGGLEEMEPERWKQSQLLTDRDPVLGGTQTLCDTA
ALMRDSFSSQPPDLMTGTVSSLA
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttctgtgggtaaaaggccgagcacggagctgaggaaggtgcgcctgcgtgat
gcggctcgctgtaggcggagtcaggaaacggaggtgttctacgaacttgcacactcatta
cccctgacacgccgcatcacctcccacttagacaaagctgggatcatgagggtaaccctc
agctacctgcgtatgcgccaacttctccagtcttcagggaccaaggcaacgccagcagag
gaggaagaggaggatcccattgatacgttctaccaacaggcacttgctggctttatcatg
gtcatgagtgaagatggggatatggtcttcctgtctgaaaatgtcagcaagtttataggc
atcacacagctggagctgcttggacagagtgtgtacgattatgtccatccatgtgatcaa
gaggagctgagagaccttcttaccacaaagccgggactctttaagaagaagtctgatagt
tgtacagagtgcaacttcttcctgagactgaaaagcacacttacgagccgtggaaaaacc
gtgaacatcaagtctgccacctggaaggtggttcactgcataggctatttgaagacacta
aatcaggaaggagaagactcttcacccgcagggagctacatgaccctgctgtgtgaaccc
attccacacccgagctatgtggaattccctctggacagcaacaccttcctcacacgccac
aacatggacctgcacttcaaccactgtgatgaccgggtgacggagcttgttggataccat
cccagtgacctgatcggtcgatctgtctacgattttttccatgcgcttgattttgatcat
ctgactaggagcttgcatatcttgatctccaaaggtcaggtgtgcactagccattaccgc
ttcctggctaagaacggaggatttgtttggaccgaaacccaggccacggttctatacaac
aagaagaccacgcagcctgaagctgtagtgtgcctcaacttcatcctcagtgcggtggaa
gaggcagacacggtgttctccattgagcagacgcgcagtgactcgatggaggacaaaccg
agtgtgattacggtggacgactcagaggatgaaatgagtagcagcagcagcagcagcagc
agcgagcttttccaccgtttgaaggacaatccagaggatcttctgcagctggcaccagcc
ccaggagataccatcataccactgacagagcatagcgagttgttctttggccgaccatcc
agccccaacacactgcccacatgtccaaaggaactgtgtaccccaaaactccgccagctc
ctctcacccatatttgacaaccctgactcctctgaactgagctcgagcgatgagattctc
atggacactggtgatgtggagaagttcttctgcaagccagaggagactcagaaaaagcca
atggaggatatggatgacatggatctggatatgttggcaccatacatctccatggatgaa
gacttccagctgaccttcctaccacagttacccgaggcagagacacagactgatgtatca
accacagcttctaagaaaagaggcctggaggaagaggaagacgtaccatctctaacatct
aactgggagaagagacagaagaactcccccatagaggaggaatttcttctcactcactcc
tcgttgattcaggttgcaggaggtttagaagagatggagcctgagcgttggaaacagagt
cagctcctgacagacagagatcctgtgctgggaggaacacaaacactctgtgatacagca
gctttgatgcgagattctttctcatcacaaccacctgatttaatgactgggactgtatcg
tctcttgcctga
DBGET
integrated database retrieval system
