Tachysurus fulvidraco (yellow catfish): 113643762
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Entry
113643762 CDS
T08119
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440
Homologous recombination
tfd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113643762 (brip1)
03460 Fanconi anemia pathway
113643762 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113643762 (brip1)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113643762 (brip1)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113643762 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
113643762 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
HBB
DUF6399
Motif
Other DBs
NCBI-GeneID:
113643762
NCBI-ProteinID:
XP_027003989
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All DBs
Position
11:11445292..11513414
Genome browser
AA seq
1692 aa
AA seq
DB search
MPQNIFQYFAEQESMLDFRGLLSGTTDLGHMWGTPAHCKSCRHGCTWSLLVLSSSLCRSK
SSSIFTSSGMCSSCSARQRFTVTLQHHSCPTVATHAHSLSMAEYTIGGVKINFPCKAYPS
QLAMMNSIVRGLNHGQHCLLESPTGSGKSLALLCSALAWQQAQYAKPDQDEGSPSCDVKK
PCDVTTPCQCVCHSRTPCSSTFFSTTASKPAVIDLTGEDSTAQVSTPSRALEENPPKRST
LSSRLSEKFQASLTKQEEPSDEDFKPDKKRIRAPAADQRQSRKRRCLEKGVIFDDDEEEE
ERANRMAQATADGSLPPAESCSLLPCSLCACASLAEGQKAGGKVKDKDKERNGKKAVPKI
FFGTRTHKQITQIARELKRTLYSTVPMTILSSRDHTCVHPEVVPHANRNERCKELLEAKN
GQICRFYHNVHKMREQRTLQWVHGLHQAWDIEELVSLGSKLRSCAYYAARELMQEACIVF
CPYNYLLDPLIRESMDINLKGQIVVLDEAHNIEDCARESASFTINQAQLLEAREDLEVML
KYNIRRNNHEPLLGFCCSLLNWIQESSNNLQDRDYETAYKVWTGKEVLDIFHGLGITAET
FPVLQKHFEAVLEKEERVGLVNGREDTVQVPTISSKTQTVLKSLFMVLGFLFRQNCRFAD
DYRVALQQSYVWTAQEDVPDVQGFFARPRRRRQTARTKSLVHTLSFWCLNPAVAFSDLST
AVHSIVLTSGTLSPMGSFSSELGLKFSIQLEASHVISKSQVWVGTIGAGPQGRRLCATFQ
HAETFNFQDEVGALLLKVCQTVSRGVLCFLPSYKMLDKLRDRWMNTGLWEKLEEKKAVIA
EPRGGAKSDFDELLQTYYNAIRQSGARDGALLIAVCRGKVSEGLDFSDDNARAVVTIGIP
FPNIKDLQVELKMKYNDQHCKSRGLLPGGRWYEIQAFRALNQALGRCIRHKNDWGALILV
DDRFRANPNKYITGLSKWVRQLVKHHDSFTSAMQSLVSFSQCQQGEIESHTEELVQANLE
SPRTQSSTLQLPPELPKMHQSLSSEGQITPPSEAGGQKSSQHQSESLISQCNMPKILSKP
QTMATLFTTTPVSSRFRTPIFQSKNSKKDLNQCVDLAVINKDTDSAYDQAAKDQTTVVPE
NKLNEIPPDSPLQTPALSPVMTCCISDQEASDEGSEDAKEDDQSIFYSPELFEGEDEVSA
ATAVEENEETAKAATEETHHHIEQLLCPVGKIADRLQPEVFRSEKGQMACAGPSDLKEAA
MFAERDYVSPNKDCVLSESLSEQADKTCSIGSENNATQQQQNSSNKSRRLSRSRQKSSSR
EAGHSAAERKKEKFYKPRKRGSCDKASQSSKSPAQTPALHQVQDIRPQSSDAVTTETQVE
RLLKSETIKDSECEISSKASVFCMQYGSTKAKNTALTVRRTTRKTGIKHMSCSNATASDC
HTDSQSAMSFDIGNSEPHRRKRHLTVCNERNGSSHHTGEIREVSSVFQGGIRVQRSSVKK
RRLSNMVGKDKTSIIKPYKRQKQFSSGSPCMKGLNCGLCQMELLPFAQGVVQSVVCEQVE
VSKLVESLKQFGERPQCLCSPVKASQSIGNSLLMVQNSVDLQTLRCSLQPYLPANKKGLC
SYNAMWNKDKCSVTQLLQCQGCVSDHTDWAVIMAAEVHHPKEPALDQIWLVPSALRFCSR
IKTLWPVQGSQQ
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaaaatattttccagtactttgctgaacaggagagcatgctggattttcggggt
ttactcagtggaacaacagacttggggcacatgtgggggacaccagcccattgtaaatca
tgtagacacggttgtacctggagccttttggtcctctcatcatcactctgcaggtccaaa
agctcatcaatattcacctcctctggcatgtgctcttcctgcagtgcaagacaaagattc
acagtgacactccagcatcactcatgtcccacagtagccacacatgcacactcactcagc
atggctgagtacaccataggaggagtgaagataaacttcccctgcaaagcatatccctct
caacttgccatgatgaactctattgtccgtggcctgaaccatgggcagcactgtttactg
gaaagccctaccggcagtggaaagagccttgcactgctctgctcagcgttggcatggcag
caggcacagtatgctaagcctgaccaggatgaaggaagtccttcttgtgatgtaaaaaag
ccatgtgatgttactaccccatgtcagtgtgtgtgccacagcagaactccttgctcatcc
actttcttcagcactacagcctctaaaccagctgtgattgacctcactggagaagactct
actgcccaagtcagtacaccttcaagagcattggaggaaaatccaccgaagagatccaca
ctatcatccaggctttctgagaaatttcaagcttccctgactaaacaggaagaaccaagt
gacgaagactttaagcctgataaaaagcgcatccgggcacctgctgctgatcagaggcag
agcaggaagcgaagatgtcttgaaaaaggtgtgatattcgatgatgatgaggaggaagag
gaaagggctaatcgtatggctcaggccacagctgacggtagcctgccacctgctgaaagc
tgttctctactaccttgttccctgtgtgcttgtgcaagcctcgcagaaggtcagaaggca
ggtggaaaagtcaaggacaaagacaaagagcgcaatgggaagaaagctgtacccaaaatt
ttctttggaacacgcactcataaacagataacccaaattgcacgagagctgaagcggacg
ctgtattctaccgtgcctatgaccatcctatccagccgagaccatacgtgtgtccaccct
gaagtggtaccccacgccaaccgcaatgaacgctgcaaggagctgctcgaggccaagaat
gggcagatatgtagattctaccacaatgtgcataagatgcgggagcaaaggactttgcag
tgggtgcatgggctgcaccaggcctgggacatagaagagctggtcagtctgggcagtaag
ctgcgctcctgtgcctactatgcagcccgggagctcatgcaggaggcttgcatagttttt
tgcccatacaactacttgctggaccctcttatccgggagagtatggacatcaatctaaaa
gggcagattgtggtgctggatgaggctcataacattgaggattgtgcccgtgagtctgca
agcttcacaataaaccaggctcagctgctggaggctcgtgaggaccttgaagtgatgttg
aaatataacatccgtcggaacaaccatgagccccttctaggattttgctgcagcctgctc
aactggatacaagaaagctccaataatttgcaagacagggattatgagactgcctataag
gtgtggactgggaaggaagttctggacattttccatggtcttggtataacagctgaaacg
tttcctgtgcttcagaagcactttgaggcagtgctggagaaggaagagcgagttgggctg
gtgaatgggagagaagacaccgtacaggttcccaccatcagctccaaaactcagactgtg
ctcaagagcctttttatggtgttgggcttcctgtttcgacaaaactgcagatttgcggat
gattaccgtgtggctctgcagcagagttatgtttggactgcccaggaggatgtgccagat
gtccagggtttttttgcccggcctcgtcgtcgccgccagacagcccgcactaaatccctt
gtgcacacactcagcttctggtgcctaaaccctgcagttgcattctctgatctgagcaca
gcggtccacagtatagtgctcacttctggtaccctctcacccatggggtccttctcttct
gagctaggcctcaagttctccatccagctggaggccagccatgtcatcagtaagtctcag
gtttgggttggcaccattggggcaggtcctcagggccgtagactgtgtgccactttccag
catgcagaaaccttcaacttccaggatgaggtgggtgcactgctgctgaaagtgtgccag
acagtgagccgaggagttctctgcttcctgccgtcctacaagatgctggataagctgagg
gatcgctggatgaacacaggtttgtgggagaagctggaggagaagaaagcagtgattgca
gagccacgtggaggagccaagagtgattttgatgagctgctacaaacgtactacaatgcc
attagacaaagtggtgccagagatggagcacttctgattgcagtttgcagagggaaagtg
agtgaggggctggacttttctgatgacaatgccagagctgtggtcactattggcattccc
ttccccaacatcaaagacctgcaggttgaactgaagatgaaatataatgaccagcactgt
aaatccagaggccttcttcctggaggccgatggtatgagatccaggccttccgggcccta
aatcaggctttgggaaggtgtattcgacataaaaatgactggggtgcacttattttagtg
gatgatcgttttagagctaaccccaacaagtatatcacaggcctgtccaagtgggtgcgt
cagctggtgaagcaccatgacagctttactagtgccatgcagtctttggtgtccttctcc
cagtgtcagcaaggagaaatagagagccacactgaagaacttgttcaggctaaccttgaa
tcccccaggactcagtcatcaactctacagttgcctccagagcttccaaaaatgcaccag
tccctgagctctgagggtcagattactcctccctctgaagcaggtggccagaaatcttca
cagcatcaatcagaatcactaatttctcagtgtaacatgcctaaaatcctgtcaaaacca
caaacaatggctaccttgttcaccactacaccagtgagttctcgattcaggactcctatc
ttccaatctaagaactccaaaaaggacctgaaccagtgtgtagatttagcagtcattaat
aaggacacggattctgcatatgaccaggcagctaaagatcagactacagttgttcctgag
aacaaattgaatgagattcctcctgactctcctcttcagacaccagccctgtcccctgtt
atgacttgctgtatttctgatcaggaagcaagtgatgaaggatctgaagatgctaaggag
gatgaccagagtatcttctattccccagagctgtttgagggagaagatgaggtgtctgct
gcaactgctgtagaggaaaatgaggagactgctaaggcagctacagaggaaactcatcat
cacattgaacagcttctttgccccgtcggaaagatagctgacagactacagcctgaggtg
ttcaggtctgagaagggccaaatggcctgtgctggccctagtgatcttaaagaagctgct
atgtttgctgaaagagactatgtttctcctaacaaagactgtgtgctgtctgagagttta
tcagagcaggcagacaagacctgtagtataggcagtgagaacaatgctacacagcaacaa
caaaacagcagcaataagtcacgtaggctctccaggtccaggcagaaatcatctagtaga
gaagcaggtcacagtgcagcggagagaaagaaagagaaattctacaaacccagaaagcga
gggagttgtgacaaggcatcacaatcttcaaaaagcccagcccagactcctgctttacac
caagtccaggatattagacctcaaagcagtgatgcagttacaacagaaacccaagtagaa
aggctgctgaaatcagaaactataaaggattctgaatgtgaaattagctccaaggcctca
gttttctgtatgcagtacggttctactaaagcaaagaatacagcactgaccgtgagaaga
acaacaaggaaaacaggaataaagcacatgagctgttctaatgccacagcaagtgactgt
cataccgatagtcagtctgcaatgagctttgatattggcaattcagagccacatagaaga
aaaagacatttgactgtatgtaatgagaggaacggttcttctcatcacacaggagaaata
cgtgaggtctcaagtgtttttcagggagggataagagttcaaaggtcatctgtaaagaaa
agaaggctgagtaatatggtgggaaaggataaaacctctataatcaagccatacaaaaga
cagaagcagttttccagtggttcgccatgtatgaaaggacttaactgtggtttatgtcag
atggagctccttccctttgctcaaggtgtagtacagagtgttgtttgtgaacaagtagaa
gtgtccaagttagtggagagcttgaagcaatttggtgagagaccacagtgtttatgtagt
ccagtaaaagccagtcagagtattggaaattcacttctaatggtccagaacagcgtagat
ttacagaccctgcgttgttcacttcaaccctacctgcctgcgaataaaaaaggcttgtgc
tcatacaatgcaatgtggaacaaggacaagtgttcagtgacccagctgctgcagtgccag
ggttgtgtatctgaccacactgattgggctgtcatcatggcagcagaggtccatcaccct
aaggaacctgctcttgaccagatctggttggttccgtcagcactcaggttctgctctagg
atcaagactctttggcctgttcaagggagtcagcagtga
DBGET
integrated database retrieval system
