Tachysurus fulvidraco (yellow catfish): 113643970
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Entry
113643970 CDS
T08119
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440
Homologous recombination
tfd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113643970 (top3a)
03460 Fanconi anemia pathway
113643970 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfd03032
]
113643970 (top3a)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113643970 (top3a)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
113643970 (top3a)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Topoisomerases
113643970 (top3a)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
113643970 (top3a)
FA (Fanconi anemia) pathway
113643970 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
zf-C2H2_10
Zn_ribbon_GRF_2
Mtrc-MtrF_II-IV_dom
T2SSF
Motif
Other DBs
NCBI-GeneID:
113643970
NCBI-ProteinID:
XP_027004221
LinkDB
All DBs
Position
24:complement(14093594..14103797)
Genome browser
AA seq
997 aa
AA seq
DB search
MIIVGKLKSLLAAQGRICRSISFSMIRRTPIKKVLCVAEKNDAAKGISEIMSNGRSRRRE
GYSVYNKIYEYEYNLFGQNVSVCMTSVSGHLLSLEFKAPFQKWHSCNPVLLFDAEVEKYC
PENFVQIKRTLEREARQCQALIIWTDCDREGENIGFEIIDVCKAVKQNIQVFRARFSEIT
PTSIRRACETLTEPDINVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPESLSDQLISYG
SCQFPTLGFVVERFKAIQAFIPETFFKIKVVHEPNEDESVEFSWKRHRLFNHTACLVLYH
LCMEDPVARVMSVTSKPKNKWRPLPLDTVELEKLASRKLKISAKETMRVAEKLYTQGFIS
YPRTETNMFPKNLNLVPLVEQQTQDREWGAFARGILESGGPTPRNGNKSDQAHPPIHPTK
YTNNLQGNEKRVYEFIVRHFLACCSKDAQGQEVTVEIDIAEERFSASGLTIIARNYLDVY
PYDKWYNKVIPLYTPETTFQPTAVEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEH
IETIKSRMYVGLTDDQRFLPGELGMGLVEGYNSMGYEMSKPHLRAELEADLKLVSEGRKD
KATVLRHHVTKYKTVFIESVRKAKKLDEALSNYLGQARDYTEQEEQELEMPLPVRKCPQC
SRDMVLKKKKDSTAKFLSCTGYPSCKAAVWFPDTVLEVSRDDSVCPSCHPHPVNMLRFKF
KRGSLPPGMPLEFVGCIGGCDETLREVLNLKYLRGGDSTTQVNRSSTTQQSNRPVNNPAL
QNRSENRPPLHSPPAWSTQLSRSVQNNVVCNCSQDALLLTVRKEGPNQGRQFYKCNTGNC
NFFLWDEQQNDQPGSAGRIGSTGQPSPSFQPPRPSLGFANTPQQKQGSRGSGGGGEESMC
SCNIPAVTRTVMKDGPNKGRVFLTCSKPRDQQCGFFQWVDENVAPAAVGNVRGNNNKWTA
SKKNEASSSRASAPKRPRTCGICHQPGHTRTNCPQAR
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgatcattgtggggaagttaaagtctctattagcagcccagggtcgtatttgtcgctct
atatcctttagtatgatcagaagaactccgattaagaaagtgctttgtgtagctgaaaag
aacgatgcagctaaaggcatctcagagatcatgtcaaatggcaggtcaagaagaagagaa
ggttactcagtctacaacaagatatacgagtatgaatataatctttttggacaaaatgtt
tctgtgtgcatgacatctgtgtctggacaccttttaagtcttgaattcaaagctcctttt
cagaaatggcacagctgtaatccagtcttgctgtttgatgctgaagtggaaaagtattgt
cctgaaaactttgtgcaaattaagcggactttggagagagaggccagacagtgccaggct
ctgatcatctggactgattgtgatcgtgagggagaaaacattggcttcgagatcatcgac
gtctgcaaagctgtcaagcaaaacattcaggtgttccgtgctcgcttctctgagattact
cccacttccattaggagagcctgcgagactctgacagagccggacattaacgtcagcgat
gctgtggatgtcaggcaagagctggatctccgcatcggagcggcttttacgaggttccag
actttacggttgcaaaagatcttcccagaatctctatctgatcagctgatcagttacggg
agctgtcagtttcctaccttgggctttgtggtggagaggtttaaagctattcaagcgttc
atccctgaaaccttctttaaaattaaagtggtccatgagcctaacgaagacgaatcggtg
gaattcagctggaaaaggcatcgtctcttcaaccacacggcatgtctcgtgctttaccac
ttgtgcatggaggaccctgtagcaagagtgatgtctgtaacaagtaaaccaaaaaacaaa
tggcgtccattacccctcgacactgtggaacttgaaaaactggcttcaagaaaattgaag
ataagtgctaaagagaccatgagagtagccgagaaactgtacacacaagggtttatcagt
taccctcgtactgagaccaacatgttcccaaagaacctgaaccttgtcccgcttgttgag
cagcagactcaggacagggaatggggggcttttgctcgaggcattttagaaagcggtggg
ccaacacctcgaaacggaaacaaatccgaccaggcccatcctcccattcaccctaccaag
tacacaaataatcttcagggaaacgagaaacgtgtgtacgagttcatcgttcgtcacttt
ctggcctgttgctccaaggatgctcagggccaggaggtgactgtagaaattgacattgct
gaggagagattttctgcaagcggactgacgattatcgctcgtaactatctcgacgtttac
ccctacgacaagtggtacaacaaggttattccgttatatacacctgaaacaacatttcaa
ccgaccgctgtcgagatggtggaaggacagacgagtccacctcaactcctcactgaggcc
gacttgatttctctcatggagaagcatggcatcggcacagacgcaacacacgccgaacac
atcgagaccatcaagagccgtatgtacgtcggtctgacggatgatcagaggttccttcct
ggggagcttggcatgggtctcgtcgaagggtacaattccatgggctatgaaatgtctaag
ccacatttgagggcagagctggaggcagacctgaagctcgtgtctgaagggagaaaggac
aaggcaactgtcctcagacatcatgtaacgaaatacaagacagtttttatagaatcagtc
aggaaggcgaagaagttggatgaggctctgtctaattatttaggccaggcccgagattac
acagagcaagaagaacaggagttagagatgccgctcccggtgcgtaaatgtccgcagtgc
agccgagacatggttttgaagaagaagaaggacagcacagcgaagtttctgtcatgcaca
ggctacccgagctgtaaggcagctgtgtggtttccagataccgttctggaggtcagcaga
gatgacagtgtctgtccatcgtgtcacccacatcctgtcaacatgctgaggttcaagttc
aagaggggaagtctacctccagggatgcctctggagtttgtcgggtgtatcggtggctgc
gatgagactctgagagaggtcttaaatttaaagtatcttcgaggaggagattccaccact
caggttaatcgcagttcaacaacacagcaatcgaatcgtccagtaaacaatcctgcgctt
cagaacaggtctgagaacagaccaccactccacagtccaccggcctggtccacacagctc
tcacggtctgtccagaacaatgttgtttgtaactgtagccaggatgctcttctcctcacg
gtgcgtaaagaaggtcccaaccaaggtcgtcaattctacaagtgcaatacggggaattgt
aacttcttcctgtgggacgaacagcagaacgaccagcctgggtcagcaggaaggatcggg
tcaacgggacaaccgagccctagctttcaaccacccagaccttctcttggctttgcaaat
acacctcagcagaagcagggcagcagaggatctgggggaggtggagaagagagtatgtgc
agctgtaacatacctgcagtcacaaggaccgtcatgaaagatggacctaacaaaggcaga
gtgttcctcacctgcagcaaaccacgagatcagcaatgtggcttctttcagtgggtagat
gagaacgttgctcccgctgctgtagggaatgtaagaggaaacaacaataaatggactgct
agtaagaagaacgaagcctcttcaagcagagcttctgctcctaaaagaccaaggacttgt
ggtatttgccatcagccgggacacacgcgcaccaactgtcctcaggcccggtga
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