Tachysurus fulvidraco (yellow catfish): 113644067
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Entry
113644067 CDS
T08119
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113644067 (rc3h1b)
04121 Ubiquitin system [BR:
tfd04121
]
113644067 (rc3h1b)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113644067 (rc3h1b)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113644067 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
113644067
NCBI-ProteinID:
XP_027004388
LinkDB
All DBs
Position
1:19919503..19933113
Genome browser
AA seq
1113 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGAQVPKPQPVALITSPEDTKHYDEARQCVEELALYLKPLSSARGLG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGTEQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAQRLPCGPSLLPDEGVPLEGMTRKPSP
LTNGIVAPCPPPPSPLLARGHDPSAYELMRKPKLDSLSAPGSPPDPLDKTGLPLPPHAIA
HPRAEHLPVPKQIPGVPRGAPPLYPQQQHELFYPDARAASGAQYDSQYSTATPYPYQPTQ
YVPPRYIRNPLPSGDASYQDPYPAYGPERQYPPPHHSGPPFSGVGGHPYPPPSHYDARRH
GPYAVPPPPPPPQPFGPPRDELVRMSPVSLDVPHTPGAPNSLYHPEVASRERYPPEGYYP
PAPHSGQIRSHITDPYGRSQPSLESLHRRRKELLNQLEERKVISPPPFAASPTLPSHSFP
NEYPQEYMEDGSKAFGTREPDYAGQYSPWSCDTFGSYISSKDPKPKDGVSAGAAEMMNME
GKGLREPPLDGQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAMASSQ
ATGSKHITVADYSYGNHGGGWGGVSYPQHQSIASPGHFSERLPASTPDREQLKMELQQVN
QQISQQTQIRSMEAASNSMLLQREASALNAQPPAAKWPAGGAVSSEQLSLELHHVEREIG
KRTREIALENQAAQEVPYKLKATENGQSDHKAQLEELSLALGDVSNGVSSIVPANSVGGS
MMSLSSNMSTLSLCSGEQAGSGSELQKNGVVHS
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtccaagcgccgcaatggaccgagttcctgctgtgtcccatctgcacgcagacg
ttcgaggagacggtgcggcgacccatcagcctcgggtgcggccacaccgtctgcaagatg
tgcctgaacaagctgcaccgcaaagcctgccccttcgaccagacggccatcaacaccgac
atcgagcagcttcctgtcaactcggccctgctgcagcttgtgggggctcaggtgccaaaa
cctcaacctgtggcactcattactagtccagaagacaccaagcactacgatgaggcccgg
cagtgtgtggaggagctcgccctctacctcaaacctctcagcagtgcaagaggcttgggg
ttgagtaacgcagcacagagcatgctcagcagacccatgcagaggaagctggtaaccctg
gtgcactgccagctagtggaggaagagggccgggtgcgtgccatgcgcgctgcccgctcg
ctgggagaacgtactgtcacagagctcatcctgcagcatcaaaacccccagcagctctcc
tccaacctgtgggctgccgtacgcgccaggggctgccagtttctcggaccagccatgcaa
gaggaggccttgaagttggtgctgctggctctggaggacggatctgctctctcccgcaag
gtgctggtgttgtttgtggtacagcgtctggagcccagattccctcaggcctccaaaacc
agcatcggacacgtggttcagctgctttaccgtgcctcctgttttaaagtgaccaagaga
gacgaggactcgtccctgatgcagctgaaagaggagtttcggacgtacgaggctcttcgg
agagagcacgactctcagatcgtccagatcgccatggagggaggtctgcgcatcgcccct
gaccagtggtcctctctgctctacggggaccagtctcacaagtcccacatgcagtccatc
atcgacaagttgcagacgcctgcgtcctttgcacagagtgtgcaggagctgactatagca
ctgcagaggacgggcgaccccgccaacctgaaccgcctcagacctcatttagagctgctg
gccaacatcgaccccagtccagatgctccgcctccaacatgggagcagctggagaagggt
ctggtagcagtgaagacggtggtgcatggcctggtggactttatccagaatcacagcaag
aagggcactgagcagcagcagcctcctcagcacagcaagtacaaaacctacatgtgccgg
gacatgaagcagaaaggaggctgcccccgaggtgccagctgtaccttcgcccactcgcag
gaagagctggagaaataccgtaagatgaacaagcgccttgctcagagacttccgtgtggt
ccctccttgctacccgacgaaggcgtgcctctggagggcatgacacgcaaaccttcaccc
ctcaccaacggcatcgtggcgccgtgtccacctccgccgtcaccgcttttagcacgtgga
cacgacccttcagcctacgagcttatgcgaaagcccaaactggacagcctgagtgctcct
ggatctccacctgatcctttggataagaccggcctgcccctgcccccacacgcgattgcc
cacccaagggccgagcacctccctgtgcccaagcagattcccggtgtgcctcgtggcgca
ccgccactctacccacagcagcagcatgagctcttctatcccgatgccagagcggcgtca
ggagcgcagtacgacagccagtactccactgctaccccgtacccttaccagccgacgcag
tatgtgccaccacgctacatccgtaaccctctgccctcgggcgatgcctcgtaccaggat
ccgtaccctgcttacggccctgaacgccaatacccacctccccaccactctgggccacct
ttctcaggtgtcggtggccatccttaccctcccccctctcactatgatgcccgtcggcac
ggcccgtacgcagtccctcctccaccaccaccccctcagcctttcggtccgccccgagac
gagctggtacgcatgagccctgtatccttggatgtgccacacactccaggggcccccaac
tccctctaccaccccgaggtagcatcccgggagagatatcccccagaaggttattacccc
cctgcaccacactccgggcaaatcaggtcccatataacggacccgtacggccgctcccag
ccgagcctggagtccctgcaccgcaggcgtaaggagctgctgaaccagctggaggagaga
aaagtcatttctcctccaccattcgctgcctccccgactctgccctctcactctttcccc
aacgaataccctcaggagtacatggaggacggttccaaagcttttggcacccgagaaccc
gactacgccgggcagtactcaccgtggtcatgcgacaccttcggctcatacattagctcc
aaagatcccaagccgaaagacggcgtgtccgccggagcagcggaaatgatgaacatggag
ggaaagggcctcagggagccgcctctggacggacagcggcgctcggcagaagccaaagac
gacgatcccatcattcctttcggcccgctgcccacggtgtcgccgtttggtgccatttct
cgcacgtcaaaaacaggctaccagaccacgggccccgtgcaggccatggcatcctcacag
gccaccggatccaaacacatcaccgtagctgattattcctacggaaaccatggtggcggc
tggggcggcgtgtcctaccctcagcaccagagcatcgcttctccgggacacttcagcgag
cggctgcccgcgtccacccccgatcgagagcagctgaagatggagctccagcaagtcaac
cagcagatcagtcagcagacgcagatccgcagcatggaggctgcgagtaactccatgctg
ctgcagcgagaggccagcgctctgaacgctcaaccgcctgccgctaaatggcctgcgggt
ggtgccgtgtccagcgagcagctcagcctcgaacttcaccacgtcgagagggaaatagga
aagaggacgcgtgaaattgctctggagaaccaggcggcacaggaagtcccgtacaagcta
aaggccactgaaaatggccagagtgaccataaagcccagctagaggagctctctttagca
ctgggcgacgtctcgaacggcgtaagcagcatcgttcctgccaacagcgtcgggggatcc
atgatgtctctgtccagtaacatgtctacgctcagcctgtgctctggagagcaagcagga
agtggatcagagctccaaaaaaatggagtcgttcattcttaa
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integrated database retrieval system
