Tachysurus fulvidraco (yellow catfish): 113644401
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Entry
113644401 CDS
T08119
Symbol
hif1ab
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b isoform X2
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04137
Mitophagy - animal
tfd04140
Autophagy - animal
tfd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113644401 (hif1ab)
04137 Mitophagy - animal
113644401 (hif1ab)
04148 Efferocytosis
113644401 (hif1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113644401 (hif1ab)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
113644401 (hif1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
113644401
NCBI-ProteinID:
XP_027005020
LinkDB
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Position
16:complement(7914968..7928269)
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AA seq
788 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARCRRGKESEVFYELANQLPLPHNVTSHLDKASIMR
LTISYLRMRKLLNSCQNKDETVEESELESQLNSFYLKALEGFLMVLSEDGDMVYLSDNVC
KCMGLTQFDLTGHSIFDFAHPCDQEEVREMLVHRTGSKKTKEINTERSFFLRMKCTLTSR
GRTVNIKSSTWKVLHCTGHVRVQEHSGGSGDGGFKEPSITYLVLICEPIPHPSNIEVPLD
SKTFLSRHTLDMKFSYCDERITELMGHEPDDLLNRSVYEYYHALDSDHLNKTHHNLFAKG
QATTGQYRMLAKKAGFVWVETQATVIYNPKNSQPQCVVCVNYVLSGIVEEDMVLSLQQTM
PEKTAETVEREEEEEEELQVEKEDNSIMDMMKLFKKDLLTSLDSPNNLYEKLKDEPEALT
VLAPAAGDTIISLDFNSSDSEIQLLKEVPLYNDVMLPSTSEKTALPLSPLTPSNPSPDLE
KMEPGTEDFSFTSTAHRTKDTANTPSSSTSSSEPSSPADYFHVDSDIGSEFKLDLVEKMF
ATDTEANTDFNTQEMGDLDLEMLAPYIPMDDDFQLHIPSPLDTLPSSPQTGSDINSLFQQ
SPPHPPSASSTNISLKPEPSPRIPSPLHLLQEVSSIFVTPFNEVSQALDNSPPIGTPLAK
SIQMEDQGVHLSTKVLSVQNAQRKRKLEITSLSQAVGLDALLQSVDEAVEPGKRAKVLEV
KGSSLLGGNKTILILPSDVASRLLSSSFETRGGLPQLTRYDCEVNAPIQDRHSLLQGEEL
LRALDQVN
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatactggagttgtcaccgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tcaagggatgcggcccgatgtcgcagaggcaaggagtctgaggtattttacgagcttgca
aaccagctgcccctgccccacaatgtcacctctcacctggacaaagcctccatcatgagg
ctcaccatcagctacctgcgcatgagaaaactgctgaactcttgtcagaataaagatgaa
acagtggaggagtctgaactggagagccagctcaacagcttctatctgaaggcgctggaa
ggcttcctaatggttctatctgaagatggagacatggtctatctctctgataatgtctgc
aaatgcatgggcctcacacagtttgatttgaccggccacagcatttttgactttgcacat
ccttgtgatcaagaggaagtaagggagatgctggtgcacagaactgggtccaagaaaacc
aaggagataaacacagaacgaagctttttcctgcgcatgaagtgcacactcactagtaga
ggtcgcactgtcaacatcaagtcttccacttggaaggttcttcactgcacaggacacgtg
cgtgttcaggagcacagtggtggttctggggatgggggatttaaagagccttccattacc
tatctggtcttgatctgtgagcccatacctcacccctccaacatcgaggtgcctctggat
agcaaaaccttcctaagtcgccatactctggatatgaagttctcatactgtgatgaaaga
atcacagaactgatgggacatgagccagatgacctgctaaataggtctgtgtatgaatac
taccatgccctggactctgaccacctcaacaagacacatcataatttgtttgcaaaaggt
caggctaccacaggtcaatatcgcatgctggccaagaaagcaggctttgtatgggttgaa
actcaagccactgtcatttacaaccccaagaactcccagcctcagtgtgttgtgtgtgtc
aactacgttctcagtggtattgtggaggaggacatggttctttctctgcagcagaccatg
cctgagaagactgcggagactgtggagagggaggaggaggaggaggaggagctgcaagta
gagaaggaggacaattcaattatggatatgatgaagctcttcaagaaggacctgttgacc
agcttggacagtcccaacaacctgtatgagaagctcaaggatgaaccagaagccctcacc
gttctggctccagctgctggggacaccattatttcacttgatttcaacagctcagactct
gaaatacagctgttgaaggaggtacccctttacaatgacgtcatgctgccctccaccagt
gagaaaactgctttgccgctgtcaccactgacacccagcaatccctctccagatttggaa
aaaatggagcctggaacagaggacttttcattcacgtccacagcccaccgcaccaaggac
actgccaatactccatctagctccaccagttcctcagagcccagtagtcctgcagattac
ttccatgttgattcagatattggttctgaatttaaactggatttggttgagaaaatgttt
gctactgacacagaagccaacacagattttaacacacaggaaatgggtgatcttgacctt
gagatgctcgccccgtatattccgatggatgatgacttccagctgcatatcccctcccct
ctggacacactcccttctagtcctcagactggttctgatattaactctctcttccagcag
tcaccccctcacccaccttcagcatccagtaccaacatttctttaaaaccagagccatca
ccccgcatcccctctcccctccacctgctgcaggaggtgagcagcatctttgtcacaccc
ttcaatgaggtctcgcaagcccttgacaacagcccaccgattggcaccccattggccaaa
agtatacaaatggaagaccagggagttcacctttctacaaaggttctttctgtccaaaat
gcccagcggaagaggaaactagagattacatcactctctcaagcggttggactggatgct
ttgctccagtctgtggatgaagctgttgagcctgggaagagggccaaggtgctggaggtt
aaaggttcaagcttacttggcgggaacaaaaccattctgatactgccatctgatgtggcc
agtcgtttgctgagcagctcatttgagaccagaggaggtttaccacaactgacacgctac
gactgtgaggtcaacgcccctattcaggaccgtcactccctgctacagggcgaggagctg
ctgcgtgccctggaccaagttaactga
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