KEGG   Tachysurus fulvidraco (yellow catfish): 113644524
Entry
113644524         CDS       T08119                                 
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39
  KO
K13217  pre-mRNA-processing factor 39
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tfd03041]
    113644524 (prpf39)
Spliceosome [BR:tfd03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    113644524 (prpf39)
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C Suf TPR_14 HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C TPR_19 TPR_16 TPR_12 ARM_TT21_5th TPR_MalT TPR_15 Apis_Csd
Other DBs
NCBI-GeneID: 113644524
NCBI-ProteinID: XP_027005245
LinkDB
Position
16:9754110..9763693
AA seq 769 aa
MEQSDLQLPEEAMTGMVGANASDGGDAAVMEGAGDSFIPDLPNLAPEAQWTMDQVPDTFA
ALENQQNPEQGQLDQYEQYLIDGHSQSAVDQKPGLAGPHDNSTCVDGNQPDTNGQTAEGH
LKESELSSEKQAETGSSDSPANMELEDGSKEESEVGDASVPKPLLPADFERLYKVVEDDP
EDFNGWVYLLQYVEQENHLLASRKAFDAFFLRYPYCYGYWKKYADIEKKHGYIQEADEVY
RRGLQAIPLSVDLWLHYITFLKENQDTSDGEAENRVRAAYEHAVLAAGTDFRSDRLWEAY
ISWETEQNKLANVTAIYDRVLGIPTQLYSQHFQRFKDHVQNNNPKHFLSEEEFVQLRLEL
AAANKPSGEGEEETPSEELPPGTEDLPDPAKRVTEIENMRHKVIETRQEIFNHNEHEVSK
RWAFEEGIKRPYFHVKALEKTQLNNWREYLDFELENGTPERVVVLFERCLIACALYEEFW
IKYGKYLESYSTEGVRHIFKKACTVHLPKKPAIHVLWAAFEEQQGNIDDARGILKSLEEA
VPGLAMVRLRRVSLERRHGNLDEAEALLEDAIKNAKNTSESTFFSVKLARQFFKVRRSVG
KAKKVLLEAIEKDETSPKLYLNLLELEYNGDVPQNEAEILACFDRALSSTMPLDSRVTFS
QRKVEFLEDFGSDINVLVTAYEQHQKLMKEQESTKRKAENGSQEPDSKRQRMDDGSAASG
QMAPDMQANHGGYNYNNWYQQYNNWGSQNTWGQYGQYGQYNQYYPPPPT
NT seq 2310 nt   +upstreamnt  +downstreamnt
atggaacaatctgatctgcaactcccagaagaggccatgacggggatggttggtgcaaat
gcctctgatggtggggatgctgctgtcatggaaggtgcaggagacagtttcatccctgac
cttcctaacttggcacctgaagctcagtggacaatggaccaagtacctgacacttttgct
gctcttgaaaatcaacagaacccagaacaaggccagctggatcagtacgagcagtacttg
atagatgggcattcacagtctgcggtggatcaaaaaccgggcctggctggaccgcatgat
aattccacgtgtgttgatggaaatcagccggacactaatggacagactgcagagggtcat
cttaaagagtcggagctgagctcagaaaagcaggctgaaacaggcagttcagacagccct
gcaaatatggagcttgaggatgggtccaaagaggaaagtgaggtaggagatgcttcggtg
ccaaaacctttactcccagctgacttcgagagactctacaaggtggttgaggatgaccct
gaggactttaatggctgggtctacctcctgcaatatgttgaacaagagaaccatctgttg
gcttccagaaaggcgtttgatgccttttttctacgctacccctattgttatggatactgg
aagaaatatgcagacatagaaaaaaaacatggatacatacaggaggcagatgaggtatat
cgcagaggtctacaggccatcccactcagcgttgacctttggcttcattatataactttc
ttaaaggagaaccaagacactagtgatggagaggctgagaatcgcgtacgggctgcctat
gagcatgctgttcttgctgcgggtacagacttccggtcagatcgtctatgggaagcttat
attagctgggagactgagcagaacaagttggccaatgttacagccatttatgaccgtgtc
ctgggtataccaactcagctgtactcccagcacttccagaggttcaaggatcatgtccaa
aacaataatccgaagcacttcctgtctgaagaggagtttgttcagctgaggttggaactt
gcagccgccaataagcccagcggagagggagaggaggaaacccccagtgaggagctaccg
ccaggcactgaagaccttcctgacccagcaaagagagtcacagagatcgagaacatgcga
cataaggtgatcgagacccgtcaagagatatttaaccacaatgaacatgaagtcagcaag
cgctgggcctttgaagaagggatcaagcgtccatatttccatgtgaaagccttggagaag
actcagcttaacaactggagggagtacttggactttgaactggagaatgggacgccggag
cgtgtagtggttctgtttgagcgctgcctgatcgcctgtgccctgtacgaggagttttgg
ataaagtatggcaagtacctggagagctacagcacagagggagtgaggcacatcttcaag
aaagcatgcaccgtccacctgccaaagaagcctgccatccatgttctctgggcagccttt
gaggaacagcaagggaacattgatgacgctcgaggcatccttaaaagcctagaggaggct
gttcctgggttggccatggtgagattacgtcgcgtgagccttgaacgtcgtcatgggaat
ttggatgaagcagaggctcttctggaggacgccatcaagaatgcaaaaaacacaagcgaa
tcaaccttcttctctgtgaaactggctcggcaattcttcaaagtacggaggagtgttgga
aaggccaagaaagtattgctagaggccatcgaaaaggatgagactagtcccaagctgtac
ttgaacctgctggagctggagtacaatggagatgtaccgcagaatgaggcagagatattg
gcatgttttgaccgagcacttagcagcaccatgccattagactcgcgtgtcacattttca
cagcgaaaagtagagtttcttgaggactttggaagtgatataaatgtgcttgtaactgct
tatgaacaacatcaaaaacttatgaaagagcaggagtccactaagaggaaagcagaaaat
gggtcacaagagccagattcaaagagacagcgcatggacgatggctcagcagcatctggg
cagatggcaccagacatgcaagcgaatcatggtggatacaactataacaactggtatcag
caatataacaactggggaagccagaacacctggggccagtatggccagtatggccagtat
aaccagtactacccaccacccccaacatga

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