Tachysurus fulvidraco (yellow catfish): 113644636
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Entry
113644636 CDS
T08119
Symbol
limd1a
Name
(RefSeq) LIM domain-containing protein 1
KO
K16682
LIM domain-containing protein
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113644636 (limd1a)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113644636 (limd1a)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113644636 (limd1a)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
113644636 (limd1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
zf-ChsH2
DUF6487
Motif
Other DBs
NCBI-GeneID:
113644636
NCBI-ProteinID:
XP_027005456
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Position
3:13057560..13080482
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AA seq
574 aa
AA seq
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MEMDKYEDLGLEASKFIEDLNMYEASKDGLFRMKRDAGNNPDFEETRRVFASKMTKIHMQ
KHHEDMTRNNLAERINGGHVKVADDRFYTKDRPPISSSRHEAASKPPILSGPTICYEGQK
HYPASPHDGRDFVYGSNNDNKDLSRSCHNPSVEPGNSYPQSVSLPANLYGTWSSKNNPQC
QISSPTLSLSSNSTETSMNHGAAPHLRQNSTSQSLTPTGTPEWFHPSATGAHREPESHLK
SSPYVNLTKHSEPIVPQKPYGDPLRNGVAQNIGTCSAVQLSPLAPSQPETHQPKGQVLCH
TQGHNSPTVPDNLVNPVVELAQSDAHNPPQALRLPCHALCVQPEPGPSAAEIKLEALTER
LEKEMDAQPKADYFGSCVKCNKAVFGANQACQAMGNLYHDGCFTCSACSRKLRGKAFYYV
SGKVFCEEDFLYSGFQQSADKCNVCGHLIMDMILQALGKSYHPGCFRCVICNESLDGVPF
TVDTENKIYCVKDYHRVLAPKCAACSQPILPPEGSDETIRVVSMDKDYHVECYHCEDCKM
ELNDEEGHRCYPLDGHLLCHTCHLKHMESSCQSV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggacaaatacgaagatttggggctcgaagcgagcaaatttatcgaagacctg
aatatgtacgaggcgtctaaagacggactgttccgcatgaagagggacgcaggaaataac
ccggactttgaggaaaccaggagagtcttcgcctccaaaatgaccaaaattcacatgcag
aagcatcacgaagacatgacgagaaacaacctggcggaaaggataaacggtggacatgtc
aaagtagcagatgacagattttacaccaaagacagaccgcctatcagtagctccagacat
gaagctgcatctaaaccacccattctctcaggaccgaccatatgctatgaaggacagaaa
cattatccagccagcccacatgatggcagggattttgtctatggaagcaataatgacaat
aaagacctttcacgctcgtgccataatccatctgtggaacctggaaactcttatccacaa
tctgtgtctcttcctgccaatctttatggcacttggtcatcaaagaacaatcctcagtgc
cagatctcatcacctacccttagcttgagttcaaattcaactgaaactagtatgaaccat
ggagcagctcctcatctgcgtcagaactcaacaagccaatctttaacaccgactgggaca
cctgaatggttccatccatcagccacaggtgctcatcgagaaccagagtctcacctcaag
tcttctccttatgtgaaccttactaagcactcagaacccatcgtgcctcagaagccctat
ggagacccacttcgtaatggagttgctcagaacattgggacgtgctctgctgttcagctg
tccccactagcaccaagccaaccagaaacacatcagcctaaaggtcaagtgctgtgccac
actcaaggccataacagtccgactgttccagacaacttagtgaaccctgttgtagagctg
gctcagagcgatgcccacaaccctcctcaggcacttagacttccatgccatgctctctgt
gtacagcccgagcctgggccatctgcagccgaaataaaattagaagctctgactgaacgc
ctggaaaaggagatggatgcccagcctaaggctgactactttggcagttgtgtgaaatgc
aataaggctgtatttggagccaatcaagcatgccaggccatgggtaacctctaccatgac
ggctgtttcacctgtagtgcctgcagtcggaagctcagggggaaagcattttactatgtc
tctgggaaggtgttttgcgaagaggattttctgtactctggctttcagcagtctgctgac
aaatgcaatgtatgtggccacctgatcatggatatgatcctgcaggccctgggcaagtcc
taccatccaggatgcttccgctgtgtcatctgtaacgagagcttagatggagttcctttt
actgtggacacagaaaacaagatctactgtgtcaaagactaccacagggttcttgctcct
aagtgtgcagcatgcagtcagccaattctgccccctgaggggtctgatgaaaccattcga
gtggtatctatggacaaagactatcatgtagaatgctaccattgtgaggactgtaagatg
gagctgaatgatgaagaagggcaccgctgttacccactagatggccacctgctgtgccat
acatgccaccttaaacacatggagtcaagctgccagtctgtctga
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