Tachysurus fulvidraco (yellow catfish): 113644941
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Entry
113644941 CDS
T08119
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113644941 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfd04121
]
113644941 (herc4)
Enzymes [BR:
tfd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
113644941 (herc4)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
HECT type E3
113644941 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
113644941
NCBI-ProteinID:
XP_027005892
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All DBs
Position
4:complement(8474374..8524782)
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AA seq
1050 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIIVEPQKCEFFNGKMVRGVGCGRRHTVFLLEDGTVYTCGC
NDLGQLGHDRARKKPEQVMALDAQNIVAVSCGEAHTLALSDKGQVFAWGQASDGQLGLSS
MEECMRVPRTIKSLSEVHVVQVSCGYRHSLALSRRGHIFSWGQNRYGQLGLGKEGPCILT
PQVIQSLQGIPFAQISAGGAHSFALTMSGAVFGWGQNKFGQLGLNDNKDRCFPTLLKTLR
SQGVVYICCGENHTAVLTKEGGVFTFGAGGYGQLGHNSINHEINPRKVFELMGNVVTQVA
CGRQHTLAFIPSSGKIDSFGLGGNGQLGTRHTSNRISPAPVKGQWRAYNEPTQIESETEK
LYTVKRIYAGGDQSFAHFHCLLDGPPPDDLRIRHSNQHVLRLNGDLIQKWLSHGHGRLSP
ETTVEIDDVFSSASCLNGSFLSTSHPDHYRTSSKCSGVDMNMARLLFNKLIQPDYPHISQ
QIADCLGRHLIPNLSSSPPDIEALRLYLILPECPLFKNPNSYITLTIPFAKAVIYLGNAP
IKVLGNWWSCLDPAVYQGLVELYKEVIVYLLRMQKIGISPSEQRSFTCFLSTCLKFLEIL
YSVNDQAGQIILYDKFYIHELEDLVDIRSDYVTWIQHQMFSMAIDSQVNLCKYPFVFDAQ
AKTMLLQTDAVIQMQMAVDQAERQNLSSLFLPGGMVESVNPCLILMVRRENVVEDTMEVL
RKSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSD
KTLEDTDLFHLIGVVCGLAIYNLTIIELHFPVALYKKLLKKTPTLEDLKELMPVVGRSLQ
DLLDYTDDVEETFCLNFTITVENFGETEVFELIPNGINIAVNNHNRQDFVNAYVDYIFNL
SVAPLFTAFYDGFHKVCGGKVLELFQPNELQAMVIGNTRYDWKELEKNTKYKGEYWTEHP
TIKFFWNVFHELPLEKKKQFLLFLTGSDRIPILGMKSLVLVIQPTGGGENYLPVAHTCFN
LLDLPKYTSQENLKEKLLQAIEHNQGFNLA
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgctggggaaatgcctcctatggtcagcttggattgggtggaattgatgaagaa
atcattgtagagccccaaaaatgtgaattctttaatgggaagatggttcgaggtgtaggc
tgtgggagaagacacactgtttttcttcttgaggatggaactgtgtatacctgtggctgc
aatgacttaggacagctggggcatgacagagcacgcaaaaaaccagagcaggtaatggca
cttgatgctcagaacattgtagcggtatcttgtggtgaagctcacactcttgctctaagt
gacaaagggcaagtgtttgcatggggacaggcttctgatggacagcttggcctttccagc
atggaagaatgtatgcgtgtgcccagaacaatcaagagtttgtcagaggtccatgttgtt
caagtctcctgtggttataggcattcccttgcactttctcggaggggacatattttctcc
tgggggcaaaatagatatggacagttaggactagggaaagaaggaccttgcatcttgacc
cctcaggtcatccagtctttacagggcattccatttgcccagatctctgcaggaggtgcc
catagctttgctcttacaatgtctggggctgtatttggttgggggcaaaacaagtttggc
cagcttggcttaaatgataacaaagatcgatgttttccaaccttgctgaagacactcagg
tcacaaggggttgtttatatatgctgtggagagaatcacactgctgtattaacaaaggag
ggaggtgtgttcacatttggagcaggcggctatggtcagcttggacacaacagcataaac
catgaaattaaccctcgaaaggtttttgaactgatggggaatgttgtgacacaagtagct
tgtggtaggcagcataccttagcattcattccatcctctggcaagattgattcttttggt
cttggagggaatggacaacttggaacccgtcacacctccaacagaataagccctgctcct
gtaaaaggccaatggagagcttacaatgaaccgacacaaatagaatctgagactgagaag
ttgtacactgtgaagaggatttatgctggaggagaccagagctttgcccatttccactgt
cttcttgatggccctcccccagatgatctgagaatacgacatagcaatcagcatgtctta
agattgaatggtgacctcattcagaaatggctgagccacggtcatggaagactttcacca
gaaacgacagttgaaatcgatgatgtattctcctcagcaagttgtttaaatgggagtttt
ctttctacaagccatccagatcattatcgcactagcagtaaatgttctggggtggacatg
aacatggctcgcctcctctttaacaaactcatccagccagattatccacatatctcacaa
caaattgctgattgtttagggaggcatttgattcccaacctgtccagctctcctccggac
attgaggctctgaggctctacctcatacttcccgagtgtcctctctttaaaaaccccaac
agttacatcacacttaccattccctttgccaaggcagtcatctacctcggcaatgctcca
atcaaagtgcttggaaattggtggtcttgccttgatccagcagtttatcaaggattggtg
gaattgtataaagaggtgattgtgtatctactccggatgcagaagataggaatttcacca
tctgagcagaggtcatttacctgcttcttaagcacatgtttgaagtttctggagattttg
tactctgtaaatgaccaagctggccaaattattctgtatgacaaattttatatacatgaa
ctagaagaccttgttgacatcaggagtgattatgttacatggatccagcatcagatgttc
tccatggccatcgactctcaggtcaacctgtgcaaatacccatttgtatttgatgctcag
gcaaagacaatgctgctccaaactgatgctgttatccagatgcagatggctgtggaccaa
gcagaaagacagaatcttagctctttattcctgcctggtggcatggtggagtccgtaaac
ccttgcctcattctcatggtacgcagagaaaatgttgttgaagacactatggaagttttg
cggaagtccaaaaatgttgattacaagaaaccactaaaggtgatctttgttggagaggaa
gctgtggatgctggtggtgtaagaaaagaatttttcctcctcatcatgaaggaactgctt
gaccccaaatatggcatgttcaggtattatgaggagtccagactcatctggttttcagac
aagactttagaagataccgacttatttcacctcattggggtcgtttgtggtttggccata
tataatctgaccatcatagaactacatttccctgtagccctgtacaaaaaactcttgaag
aaaactccgactttagaggacctgaaggagctcatgcctgttgttggaaggagtctacaa
gatctattggactacacagatgatgttgaggaaacattctgcttgaacttcacaattact
gtggaaaattttggtgaaactgaggtatttgaactaatacctaatggcattaacatcgct
gtaaacaatcacaacagacaagactttgtaaatgcctacgttgactacattttcaactta
tctgtggctcctcttttcactgccttctatgatggattccacaaagtatgtggtggtaaa
gttctggagctttttcagccaaatgaactacaggcaatggttatagggaacaccagatat
gactggaaggaactggagaagaacacaaagtacaagggagaatattggactgaacacccc
actatcaaattcttctggaatgttttccatgagttacccctggaaaagaagaagcagttc
ctgttgtttctcacaggtagtgatcgaatccccatcctgggcatgaagagtctcgtcttg
gtcattcagccaacaggaggtggagagaactatcttcctgttgcccacacttgcttcaat
cttttagacttgcctaagtatacaagccaagaaaacctcaaagagaaacttctacaggcc
attgaacacaatcagggcttcaatctggcatga
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integrated database retrieval system
