KEGG   Tachysurus fulvidraco (yellow catfish): 113645322
Entry
113645322         CDS       T08119                                 
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04140  Autophagy - animal
tfd04142  Lysosome biogenesis
tfd04148  Efferocytosis
tfd05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    113645322 (vps11)
   04140 Autophagy - animal
    113645322 (vps11)
   04148 Efferocytosis
    113645322 (vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    113645322 (vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tfd04131]
    113645322 (vps11)
Membrane trafficking [BR:tfd04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    113645322 (vps11)
   Hops complex
    113645322 (vps11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C VPS18_solenoid_2nd TPR_Vps41 Clathrin zf-C3HC4_2 Beta-prop_WDR3_1st Beta-prop_WDR36-Utp21_1st zf-rbx1 zf-RING_2 zf-C3HC4 Beta-prop_IFT122_1st zf-C3H2C3 WD40_Prp19 zf_RING_Vps8_fungal TPR_GEMI5 zf-RING_5 ADIP zf-ANAPC11 Beta-prop_EML_2 zf-RING-like Beta-prop_VPS8 zf-RING_UBOX WDR55 zf-C3HC4_3 zf-RING_Vps41 CC_Bre1 Kbp-5
Other DBs
NCBI-GeneID: 113645322
NCBI-ProteinID: XP_027006663
LinkDB
Position
20:11388851..11397351
AA seq 927 aa
MAAFLQWRRFVFFDKETVKDPSENGKSFALPMGISACDSGRGHVVLGDMDGQIWFLSRSL
QLTSFQAYKLRVTHLYQLKQHSILVSVGQDEHGINPLVKVWNTDKRDSGSPLCTRIFPAI
PGNKPAEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGSCPVTGLAFR
QAGKVTHLFVATLEKVQCYTLSVKEYPRVELDTHGCALRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKILAHWHRGYLLLISRDIKSPNKPDFGPRQLSPTEKQVLTIYD
LDNKFIAFSAAFDDIIDILAEWGSFYVLTRDGKMFMLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRQYGDHLYIKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAEKHSHHEWYLKIQLEDLKNYQEALRYIGRLPFEQAETNMKHYGKTLMHHV
PESTTVLLKRLCTNYQPIQDSTDRDSVDKLIVDKASSEEFIPIFANNPRELRAFLEHMIN
VEPFSPQGVYDTLLELRLQDWAHEQDPEKKKHLQGSALLLLTTENTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYPKVVEACKRYGDQEVCLWEQALGYFARKEEDCK
AYISEVLHHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESKQIEEDERKIQQ
YREETAHLRSEIQELSTSAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCFESYAESEA
ECPTCTPENRKVMDMLRAQEQKRDLHDHFNRQLRSSNDGFSVVADYFGRGVFNKLTLITD
PPGGKAGSGSLEADLQRDLLIHTKRNA
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggctgcgttcttgcagtggagacgatttgtgtttttcgataaagaaacagtgaaagat
ccgagcgagaatggaaaaagctttgcgttgccgatgggcatatcagcgtgtgattcaggc
cggggacatgttgttcttggtgatatggacggtcaaatttggtttttatcacgatcgttg
cagctgacctccttccaggcatataaactacgggtaacacacctgtatcagctgaaacaa
cacagcatcctggtgtcagtgggtcaggacgagcatggcattaacccactggtaaaggtg
tggaacacggataagagagacagcggcagtcctctgtgcactcgtatatttccagccatt
cctggaaacaaacctgcagaagtgtcttgtctcagtgtacatgagaacctcaatttcatg
gccataggcttcacagacggcagcgtagttttgactaaaggtgacatcaccagagacaga
cacagtaaaacactcaccctacatgagggaagctgtcctgtcacaggtctggctttccgt
caggcaggaaaagtcacccacttgtttgtggctacacttgagaaagtacagtgttacacc
ttgtctgtgaaggagtatcctcgtgtggagctggacactcacggctgcgctttgcgctgc
tctgccctcacagatccctcccaggactcgcagttcattgtagcaggagatgattgtgta
tatttataccagcctgatgaaagaggtccttgttttgcttttgatggacataaaatcctg
gcacactggcaccggggttacttacttctgatttctcgagacatcaagtcacctaacaag
cctgattttggacctaggcagttatctccaacagaaaagcaggtcttgaccatttatgac
ctagacaataagttcatcgccttcagcgcagcatttgatgacattatagacatcctggca
gagtggggctcattttatgtactgacaagagatggaaagatgtttatgctgcaagagaag
gacacccagactaaactagagatgttgttcaagaagaacctgtttgtgatggcaattaat
cttgcaaagagccagcatctggataatgacggcctttctgagatatttagacagtatgga
gatcacctgtacatcaaaggagaccatgatggagctattcaacagtatattcgaaccatt
gggaaactggaaccctcctatgtcatccgtaagttcctggatgcccagagaatccacaac
ctcactgcatacctgcaggccctccacaggcagtccctggccaatgcagatcacaccact
cttctcctcaactgctacaccaaattgaaggacagctccaagctggaggagttcattaag
agcagtgagagtgaggtgcattttgatgtggagatagctataaaggtgctgcgccaggct
gggtaccatagccatgctgtgttcctggcagagaaacactcccaccatgagtggtacctg
aagattcagctggaggatttaaagaactaccaggaggctctgcgctatattgggcggctg
ccgtttgagcaggccgagactaatatgaagcactatgggaaaactctgatgcaccatgtt
ccagaaagcaccactgtgctgctcaagaggctttgtaccaattaccaacccattcaggac
tccactgatcgggacagtgtggacaaattaatagtggacaaggccagttcagaagaattt
atccctatctttgctaataatccacgagaactacgagcattccttgagcacatgattaat
gtggaaccattttcacctcaaggagtgtacgatacgctgcttgagcttcggctgcaggac
tgggcccatgaacaggatcctgagaaaaagaaacacctgcaggggtcagcattgttactg
ctgacgactgaaaacactgtgtttgataaagcgcttgtgctctgccaaatgcacaacttt
aaagaaggagtgctctacctgtatgagaagggcaaactgtaccagcagatcatgcactac
cacatgcagaatgaggagtaccctaaagtggtcgaggcatgtaagcgatatggtgatcag
gaagtgtgcttgtgggaacaggccttgggctactttgcacgcaaagaagaagactgcaag
gcatacattagcgaggttctacatcatatagatcaaaataaccttatgccaccactgctg
gtggtacagacactggcccataactccactgcaacactgtcagtgatcaaagattatctg
attaacaaactgcaaagggagagcaagcagattgaagaagatgagaggaagattcagcag
taccgtgaggagactgcacacctacgctctgagatccaggaactcagcaccagtgcaaag
attttccagaagacaaagtgcagcatgtgtaatagccctctagagttaccatcggtgcat
ttcctttgtggtcattctttccatcagcattgctttgagagctatgcagagagtgaggct
gagtgcccaacatgtacccctgaaaacaggaaggtgatggacatgttacgggcgcaggag
cagaaacgagatctgcatgatcactttaatagacagttgaggagttctaacgatggcttc
tcggtggtggcagattactttggccgtggagttttcaataaactgacactgataacagat
cctcctgggggcaaggccgggtctggaagtttagaagctgatctacagagagacctactc
attcacactaaaagaaatgcctga

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