Tachysurus fulvidraco (yellow catfish): 113646388
Help
Entry
113646388 CDS
T08119
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03320
PPAR signaling pathway
tfd04148
Efferocytosis
tfd04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113646388 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
113646388 (rxraa)
03320 PPAR signaling pathway
113646388 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113646388 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tfd03310
]
113646388 (rxraa)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
113646388 (rxraa)
Nuclear receptors [BR:
tfd03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
113646388 (rxraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
113646388
NCBI-ProteinID:
XP_027008414
LinkDB
All DBs
Position
21:complement(19709582..19856835)
Genome browser
AA seq
514 aa
AA seq
DB search
MDPFYLDIHMGFLKPQCSLAPPPQRGRSGESCSCFSGMCPLHQRRLSTAKPSYHFHDEAF
NDSGQVTPSPLSSPTSHRPMHPPLLSPTSIGASGSLHSPISTLSSPMNGLGSPFSVISSP
MGPHSMASPGMAYGPSVSPQLNSPMNSVSSSEDIKPPVGINGMMKVPAQSSGTPLSLTKH
ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ
KCLAMGMKREVFLHTAVQEERQRAKDRNENEVESSSSANEDMPVEKILEAELAVEPKTET
YIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL
LIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELG
CLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSI
GLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggatcctttctacttagacatccacatggggttcctgaaaccccagtgctcgctggcg
ccgcccccacagagaggccgctcgggggaatcctgctcctgtttcagcggcatgtgtcct
ctccatcagcgcagactctccacagcaaagccttcatatcacttccatgatgaagcattt
aacgactcgggtcaggtgaccccatctcctctgagctctcccacgtcccaccggcccatg
catcctcccctgctgagcccgacctccatcggagcctcaggatccctgcactcacccatc
agcacactcagctcgccaatgaacggtctcggctctcccttctccgtcatcagctctccc
atgggtccgcactccatggcatctcccggcatggcctacggccccagtgtaagcccacag
ttgaactcgcctatgaactccgtcagcagctcagaagacatcaagccgccggtgggcatt
aacggcatgatgaaggtgccagcgcagtcctcggggacccctctgtctctcaccaaacac
atatgcgcaatctgcggagatcgctcctctggtaaacactatggcgtctacagctgcgaa
ggctgcaaggggttctttaagagaacagtacggaaggacctgacctacacctgcagagac
aacaaggactgtgtgatcgacaagcgccaacgaaaccgctgccaatactgtcgctatcag
aaatgcctggcaatgggcatgaagagagaagtttttttgcatacagccgttcaggaggag
cggcagcgagccaaggatcgaaatgagaatgaggttgaatcaagcagcagcgccaacgag
gacatgcctgtggagaagatcctagaggccgaactcgccgtcgagcccaagaccgagacg
tacatcgagaccaacttgggcatgccgtccaattcgcccaatgatccagtcactaacatc
tgccaggcagcagacaagcagctctttaccctggtggaatgggccaagaggatcccacac
ttttctgaactgcccctggacgatcaggtcatcctgctgagagcaggctggaacgagctg
ctcattgcatcgttctcgcaccgctccatagccgtaaaagacggcattctgctagccaca
gggctccacgtgcacaggaacagcgcccacagcgccggcgtcggagccatcttcgacaga
gtgctcacagagttggtgtcaaagatgagggacatgcagatggataaaacagagctgggc
tgcctacgagccatagtgctgtttaacccagactccaaaggactgtcaaaccccagtgag
gtggaagctcttagggagaaagtttatgcctctctggaggcgtactgcaagcagaagtac
cctgatcaacccgggaggtttgcgaagctgttgctgcggctgcctgcgctgcgttctatc
ggcctcaagtgtctcgaacacttgttcttcttcaagctcatcggggacacgcccattgac
accttcctcatggagatgctggaggcaccccatcaaatgacgtaa
DBGET
integrated database retrieval system
