Tachysurus fulvidraco (yellow catfish): 113646445
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Entry
113646445 CDS
T08119
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X3
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03082
ATP-dependent chromatin remodeling
tfd03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113646445 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113646445 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tfd01009
]
113646445 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113646445 (smarcb1b)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113646445 (smarcb1b)
Protein phosphatases and associated proteins [BR:
tfd01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113646445 (smarcb1b)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113646445 (smarcb1b)
SWI/SNF complex
113646445 (smarcb1b)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113646445 (smarcb1b)
PBAF complex
113646445 (smarcb1b)
SWI/SNF complex
113646445 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
113646445
NCBI-ProteinID:
XP_027008511
LinkDB
All DBs
Position
21:20270031..20277045
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
AASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQTEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacattcggccaaaagccgataaaatttcaactcgaagaagatggc
gatttttacatgataggttcagaggtaggaaattatctgcgtatgttcagaggatctctg
tacaaaagatatccgtcattgtggcgcagactcgcttcggtagaggagaggaaaaaaatt
gcagcatcgtcacacgccaccagtgtgactctgctgaaggcgtctgagtgtgaagagatc
ttcgagggcaacgatgaaaagtacaaggcagtgtccatcagcaccgaaccaccagcctac
ctcagggagcagaaggccaagaggaacagtcagtgggtccccacgctcccaaacagttcc
caccacctggacgctgtgccttgctccaccacgatcaaccgaaatcgtatgggacgtgac
aagaaaaggacgtttcctctgtgctttgatgaccacgaccctgcagtgatccatgaaaat
gcctcacagacagaggttctggttccaatccgattggacatggagatcgacggccagaag
ctcagagacgccttcacctggaacatgaacgaaaagctgatgacaccagagatgtttgca
gagatactgtgtgatgatttggacctgaaccccctgacctttgtcccagccatcgcctct
gccatccggcagcagatagagtcctaccctactgacagcatcctggacgaacaaaccgat
caaagagtcatcattaagctgaacatccatgtgggaaacatttctttggtggaccagttt
gagtgggacatgtcagagaaggagaactctccagaaacgtttgcactgaagctgtgttct
gagctcggcctcggaggagagttcgtcaccaccatcgcctacagtatccgaggccagctc
agctggcatcagaggacgtacgccttcaggtctgatttcagtgagaaccccttgccgacg
gtagagatcgccattcggaacacgggcgatgccgatcagtggtgccccctgctggaaacc
ctgacggacgcagagatggaaaagaagatcagagatcaggacagaaacacaaggcgcatg
cggcgactcgccaacacggccccagcctggtag
DBGET
integrated database retrieval system
