Tachysurus fulvidraco (yellow catfish): 113646494
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Entry
113646494 CDS
T08119
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113646494 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113646494 (col5a1)
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113646494 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113646494
NCBI-ProteinID:
XP_027008596
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All DBs
Position
21:complement(13963146..14040214)
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AA seq
1995 aa
AA seq
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MDSQIKWKAKRRLKGARLALAVLVLFAVATTSSRAGPVDPADLLKILDFPSLPDGVTKTT
GFCTHRKSSKGPDVAYRVTKDAQLSAPTKQLYPSSVFPEDFSIVATVRPNKGSQAFLLSI
YNEQGMQQLGIEVGRSPVFLYEDHLGKPGPEDYPLFRGVNLADGKWHRVAISVHKQSVTL
IVDCKKQTTRKLARSPNPIIDTKGIVVFGTRILDEEVFEGDIQQLMIIADHRAAYDYCEH
YSSDCEVPAQEQPQNQDPNTDKTDGDPYYYEYPFYDDDSDAEKYEDSSLTTGRDSDLGPS
DTTNPKRTVTTVVGGGEHTSTTGTASESYDYEDSMYDTYYDESTASPDGSITVTSTGTGT
GDDLHLSGRVDLGIGEDIEKHIITSIGERREEGHVHTSGTGGSGSSVRIVSGSSTSSGSS
SGSSSSTGSGSVSTSLTGSGPVSTSTGSATSSSSSSSSVDNYDNYGYGVSYGGEYTDGFG
EGENTAGFGEGEDTAGGAGSSSTVSVGGGSVSVGGGSVSVGGSSVSGGGGSVSVSGSAVV
GGGSASAGAGAGAGTDQTVDAFKEEFITDLPDSELDQIYTDYYGEVDDKVLPAETDNYQV
EGSRGEKGQKGEPAIIEPGMLVEGPPGPEGPTGLPGPPGTSGSPGSAGEPGERGPPGRPG
LPGADGLPGPPGTVLMLPFRMSTGGDAGHKGPAVSAQEAQMQAIMQQARLAMRGPPGPMG
LTGRPGPMGSPGVIGIKGESGEQGLQGPRGPMGSIGPTGKPGRRGRPGADGARGMPGQTG
PKGDRGFDGLAGLPGEKGHRGETGPQGPPGPPGEDGERGDDGEVGPRGLPGESGPRGLLG
PKGPQGSPGPPGVTGMDGHPGPKGNIGPQGEPGPPGQQGNPGAQGLPGPQGAIGQPGEKG
PTGKPGLPGMPGADGPPGHPGKEGPSGEKGHQGPPGAQGPIGYPGPRGVKGADGVRGLKG
NKGEKGEDGFPGFKGDMGIKGDRGELGAAGPRGEDGPEGPKGRSGLPGDAGPLGPNGEKG
KLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGARGIPGKPGPRGQRGPTGPRGERGPRG
PTGKAGPKGNSGSDGPPGPPGERGLPGPQGSTGFPGPKGPPGPPGKDGLPGHPGQRGETG
FQGKTGPPGPPGVLGPQGTTGETGPMGERGHPGPPGPPGEQGLPGPAGKEGAKGDPGPAG
PAGKDGPQGLRGFPGERGLPGPFGTAGLKGVEGPPGPPGPAGSPGERGPAGPTGPTGPPG
RPGPQGPPGPAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPAGPLGPPGEDGDKGELGEPG
QKGSKGDKGEQGPPGPTGPQGPIGAPGPAGADGEPGPRGQQGLFGQKGDEGPRGFPGPPG
PVGLQGLPGPLGEKGETGDVGHMGPPGPPGPRGPAGPPGADGPQGSPGGNGNPGAVGEKG
DPGEHGEPGLQGDVGPPGPRGERGEKGEAGPAGSAGPPGPKGPPGDDGPKGSPGPSGFPG
DPGPPGESGPPGLDGPPGDKGDDGESGQPGSPGPTGESGPTGPPGKRGPPGAAGPEGRQG
EKGAKGESGLEGPQGKTGPVGPQGAPGKPGSEGLRGIPGPVGEQGLPGSPGPDGPPGPMG
PPGLPGLKGDTGVKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGASGPKGDNGIFGPAG
PLGPVGPPGLPGPPGPKGAKGSSGQTGPKGEPGVPGSPGPPGPPGDVIHPLPIHSSPKRA
RRSIDASQLVDDASDANYKDYDDGMEEIFGSLNSLKQEIEQMKHPLGTKGNPARTCKDLQ
LCHPDFPDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIFPDKKSEGTRLTSWVKETPGSW
YSEFKRGKLLSYMDAESNPIGVVQMTFLRLLSASARQNLTYNCYQSVAWHDQDLNTHDKA
IRFLGSNDEEMSHDNNPYISAIIDGCALKKGYEKTILEINTPKVEQIPFVDIMFNDFGGA
TQKFGFEVGPACFIG
NT seq
5988 nt
NT seq
+upstream
nt +downstream
nt
atggatagccaaatcaagtggaaagcgaaacggaggcttaagggcgcgcgtcttgctcta
gcggtgctcgtgctgtttgctgtagcaaccacgtcgtcgcgcgctggaccagttgatcca
gctgaccttctgaagattttagattttccaagtttgcctgacggcgtaacaaaaactaca
ggcttctgcacacacaggaagtcatcgaaagggcctgatgtagcctacagagtaaccaaa
gatgctcagctcagtgctcctaccaaacaactctacccctcttcagtttttccagaggac
ttctccatcgtggcaactgtgcggccgaataaaggcagccaggcattcctgctctccatc
tacaacgagcaaggcatgcagcagctgggcatcgaggtgggccgttcacctgtcttcctc
tatgaggaccacctgggcaagccaggccctgaggactaccctctcttcagaggagtaaac
ctggctgacggaaagtggcaccgtgtggcgatcagcgtccataagcagagtgttacactg
attgtggactgtaagaagcagacaacacgcaagttggcacgaagcccaaacccaatcatt
gacactaaaggcattgtggtgttcggtacacgcattctggatgaagaagtgtttgagggt
gatattcagcagctgatgattatagcagatcatcgtgcagcatacgactactgtgaacat
tatagctcagactgtgaggttcctgcccaggaacagccacaaaaccaggaccccaacaca
gataaaacagatggtgacccctactactatgagtacccattctatgacgatgactcggat
gcagagaagtacgaggactcatcattaaccactggcagggactcagatttaggacctagt
gacacaaccaacccaaagagaaccgtgactacagtagttggtggaggagaacatacctct
accacaggaactgccagcgagtcatatgactatgaggattctatgtatgatacatactat
gatgaatcaactgcctctcctgatggctccataacagttacaagcacaggcacaggtact
ggagatgacctacacctgagcggtagagtggatctggggataggtgaagatatagagaaa
cacattatcacttcaataggagaaagaagagaagaaggacacgtccacacttccggtact
ggtggctctggttcaagcgttagaattgtctcgggttctagcaccagttcaggatccagc
tctggttctagttccagcacaggatctggctctgtttccacctctcttacaggatctgga
cctgtttccaccagtacaggatctgctaccagttctagctccagctctagctcagtggat
aattatgataactatggctacggtgtgagctatggaggggagtacactgatggttttggt
gagggcgagaacactgctggttttggtgaaggcgaggacactgctggaggagcaggcagc
agcagtactgtatctgtcgggggtggatctgtttctgttgggggtggatcagtctcagtt
gggggcagctctgtttctggtggaggtggttcagtctctgttagtggttctgctgtagtt
ggtggtggatctgccagtgccggggccggtgctggggcaggaacagaccagactgtggat
gcttttaaggaggagttcatcacagatctccctgactctgaactggaccagatttacact
gactactatggcgaagtcgacgacaaagtcttacctgccgagactgacaattaccaggtt
gaaggatccaggggagagaaggggcagaaaggagagccagccatcattgaaccaggaatg
ttggtggagggcccccctggtcctgagggcccaactggtttacctggtcctccaggaaca
tctggatccccaggctctgccggagagcctggagaaaggggtcctcctggtcgccctggt
cttccaggagctgatggactgccaggacccccagggaccgtcctgatgttgcctttccgg
atgagcacaggaggagatgctggacataaaggacctgcggtttctgcccaagaagctcag
atgcaagccatcatgcagcaggccaggctggcaatgagaggtccacctggtccaatgggc
ttgactggtcgtccaggacctatgggttctcctggtgtgattggaattaaaggtgaatct
ggagagcagggacttcagggtcctcgtggtcctatgggttccattggccctactggaaag
cctggtagaagaggtcgtcctggagcagatggagctagaggcatgcctggacaaactgga
ccaaagggagacagaggttttgatggcctagctggattacctggagaaaaggggcatagg
ggtgaaacaggacctcaaggaccccctggacccccaggagaggacggagaaagaggggat
gatggtgaggttggacctagaggtctgcctggcgaatcaggtcctcgtggtttgttagga
cccaaaggacctcaaggatctcctgggcctcctggcgtgacaggaatggatggtcatcct
ggtccgaagggaaacattgggcctcaaggggagcctggcccaccaggacagcaaggcaac
cctggtgctcagggacttccaggacctcaaggagccatcggacaaccaggagagaagggt
ccaacaggtaaaccaggattaccagggatgccaggagccgatggaccaccgggccaccca
ggaaaggaaggtccatctggagagaaaggtcaccagggaccacctggtgcacaagggcca
ataggctaccctggtcccagaggtgtgaaaggtgctgatggagttcgggggttaaaagga
aacaagggtgaaaagggagaagatggtttccctggatttaaaggagacatgggtatcaag
ggtgatcggggtgagctcggagctgcaggacctagaggagaggatggtcctgagggacct
aaaggacgctctggtttacccggagatgccggacctctgggaccaaatggagagaagggc
aagcttggtgttccaggattgccaggttatcctggaagacaagggccaaagggttctcaa
ggattccaaggcttcccaggagccaatggagaaaagggagccaggggaataccaggaaag
cctggaccacgaggacagcgaggacccactggccctcgtggagaaagaggccccagggga
cccacaggaaaagcaggaccaaagggcaactcaggaagtgatggacccccaggaccacct
ggtgaacggggtctgccaggacctcaaggatcaacaggattccctggacctaaaggtcct
cctggaccacctggaaaagatggactacctggccaccctggccagagaggagagacaggt
ttccaaggaaagactggacctcctggacctccaggtgtgctaggacctcagggaacaaca
ggtgaaactggaccaatgggagaacgaggccatcctggacctccaggaccaccaggtgaa
caaggattgcctggacctgctggtaaagagggagccaagggagatccaggtccagcaggc
cctgctggtaaagatggaccccaaggactgcgaggttttcctggagagagagggctacct
gggccttttggaaccgcaggtttgaaaggggttgaaggacccccgggtccacctgggcct
gctggttcacctggtgagcgtgggcctgctggtccgacaggacccactggaccacctgga
cggcctggaccacaaggacccccggggcctgcaggagagaaaggtggaccaggagagaaa
ggacctcaaggccctgctggtagagatggtattcagggtcctgttggtttacccggtcca
gctggacctcttggacctccaggagaagatggagataagggtgagcttggtgaacctggt
cagaaaggtagcaaaggagataaaggagagcagggtccccctgggccaactggcccccaa
gggccaattggtgcacctggtcctgctggagctgatggagagccaggcccaagaggacag
cagggtttgtttggtcaaaaaggagatgagggaccacgaggattccctggaccaccagga
cctgttggtcttcagggtttgcctggaccccttggtgagaaaggagaaactggagatgtt
ggtcacatgggtccacctggtcctccaggtccacgaggccctgctggacctccaggagcc
gatggaccccagggttcccctggaggcaatggaaaccctggagctgtgggagagaaggga
gacccaggtgagcatggagagcccggtttgcaaggcgacgttggtcctccgggaccaaga
ggagagcgaggagaaaaaggagaagctggtcctgctggctctgctggtccgccaggacct
aagggccctcctggtgatgatggtcctaaaggaagtccaggtccaagtggttttcctggt
gaccctggacctcctggagagtctggaccacctggtttggatggtcctcctggtgacaaa
ggtgatgatggagagtctggtcaaccgggatctccagggccaactggtgaatctggacca
actggacctccaggaaagagaggtcctccaggagcagcaggacctgagggacgacagggt
gagaaaggcgctaagggagagtccggtctcgagggtccacagggaaagacaggtcctgtt
ggaccccaaggtgctcctggcaagcctggttctgaaggattgcgaggaatccctggacca
gtaggagaacaaggtctgcctgggtctcctggacctgatggaccaccaggacctatgggt
ccccctggattacctggattgaaaggggacactggagttaaaggagaaaagggccatcca
ggtctgattggtttgattgggcctcctggagagcagggtgagaaaggagacagaggactg
cctggaccacagggagcatcaggacctaaaggagacaatggtatttttggccctgctgga
cctctgggaccagttggacctccaggattgcctggcccccctggtcctaaaggagctaaa
ggatcatcaggtcaaacaggaccaaagggagaaccaggtgtaccagggtctccaggtcct
ccgggtcctccaggtgatgtcatccaccccctgcccatccattcaagcccaaagagagca
cggaggagcattgatgctagccaattggtggatgatgcatctgatgccaactacaaggat
tatgacgatggtatggaggaaatatttggctcgctcaattccctcaagcaggagatcgaa
cagatgaagcacccactgggcacgaagggcaacccagcacgcacctgcaaagacctgcaa
ctctgccaccctgacttccctgacggcgagtactggattgatccaaaccagggctgctca
cgagattctttcaaggtttactgcaacttcacagctggtggagagagctgtatcttccca
gataaaaagagtgaagggactaggctaacctcctgggtgaaggagactccaggctcctgg
tacagtgaattcaaacgtggtaaactgctctcttacatggatgctgagagcaatccgatt
ggtgtggtccaaatgacgttccttcgcttgctaagtgcctcagcacggcagaacctcacg
tataactgctaccagtctgtggcctggcatgaccaggatctaaacactcacgacaaggca
attcgcttcctgggctccaatgatgaagagatgtcccatgacaacaatccatacattagt
gccatcatcgatggatgtgcgttaaaaaagggctatgaaaagactatcctggagatcaac
acaccaaaagtcgagcagataccatttgttgacatcatgttcaatgattttggtggagca
acgcagaagtttggctttgaggttggcccggcctgctttattggctaa
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