KEGG   Tachysurus fulvidraco (yellow catfish): 113646650
Entry
113646650         CDS       T08119                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030  DNA replication
tfd03410  Base excision repair
tfd03420  Nucleotide excision repair
tfd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113646650 (rfc4)
   03410 Base excision repair
    113646650 (rfc4)
   03420 Nucleotide excision repair
    113646650 (rfc4)
   03430 Mismatch repair
    113646650 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113646650 (rfc4)
   03036 Chromosome and associated proteins [BR:tfd03036]
    113646650 (rfc4)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113646650 (rfc4)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    113646650 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    113646650 (rfc4)
Chromosome and associated proteins [BR:tfd03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    113646650 (rfc4)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     113646650 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    113646650 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_30 AAA_assoc_2 AAA_11 AAA_16 AAA_22 DUF815 Mg_chelatase AAA_14 Gp44_lid DNAX_ATPase_lid SLFN-g3_helicase AAA_24 AAA_5 AAA_19 RuvB_N Cdc6_lid AAA_28 ResIII AAA_7 Kinesin UPF0176_N RelA_AH_RIS
Other DBs
NCBI-GeneID: 113646650
NCBI-ProteinID: XP_027008841
LinkDB
Position
2:39249777..39259321
AA seq 358 aa
MQAFLKGSAQSVKPQKDKATASSSGENKRQKPMPWVEKYRPKCVDEVAFQDEVIAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYKQRVLELNASDERGIQVIREKVKR
FAQLTVAGSRPDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSR
IIEPLTSRCSKFRFKPLANQIQQERLEEICRKENLKYSKEGIDALVKVSEGDLRKAITLL
QSTARLSAEKEITESIVIEIAGVVPPKVIENLLQTCYKGNFEKLEIAVKNMIEEGYAATQ
ILSQFHDIIIEEKLGDKQKSVITENMAVVDKCLVDGADEYLQLLHLCSVIMQQATQST
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcaggcttttttgaaaggatctgcacaaagtgttaagccacagaaggacaaagccaca
gcttcgagcagtggagagaataagcgacagaaaccaatgccatgggtggagaaatacaga
cctaagtgtgtggatgaagttgcttttcaagatgaggtcattgcagttttgaagaaatca
ctagagggcgctgatctcccaaatcttctgttttatggtccacctggaacaggaaagacc
tccactatccttgctgctgccagagagctttatggcccagagctttacaaacagagagtt
ctggagctgaacgcctcagatgagagagggattcaggtgatccgggagaaagtgaagcgt
tttgctcagctcacggtggctggcagtcggccagatggaaaatcatgtcctccttttaaa
atcattattctggacgaggcggattctatgaccggtgcggcccaggccgctctcaggcgc
accatggagaaggagtcgcgcacaacccgcttctgtctcatctgtaactacgtcagcaga
atcatcgagcctttgacgtcccgctgctccaaattccgcttcaaacccctcgccaaccag
attcagcaggagcgtctggaggaaatctgcaggaaggagaatctcaaatacagtaaagag
gggattgatgctctggtcaaggtgtcagagggagatctccggaaagctataacactccta
cagagcacagccagactcagtgcagagaaagagatcacagagagcatcgtcattgagatc
gcaggggtggttccacccaaagtgattgagaatctgcttcagacttgctacaaaggcaac
tttgaaaaattagagattgctgtgaagaatatgatcgaagaaggctacgctgctacacag
atcctcagccagttccatgacattatcatcgaggagaaattgggggataaacagaagtct
gtcatcacagaaaatatggctgtcgttgataagtgcctggtggacggagctgatgaatac
ttgcagctgctgcacctctgctctgtgatcatgcagcaggccacgcagagcacctga

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