Tachysurus fulvidraco (yellow catfish): 113646899
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Entry
113646899 CDS
T08119
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03008
Ribosome biogenesis in eukaryotes
tfd03013
Nucleocytoplasmic transport
tfd03015
mRNA surveillance pathway
tfd05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113646899 (nxf1b)
03015 mRNA surveillance pathway
113646899 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
113646899 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
113646899 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113646899 (nxf1b)
03009 Ribosome biogenesis [BR:
tfd03009
]
113646899 (nxf1b)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113646899 (nxf1b)
mRNA cycle factors
Stress granule specific factors
113646899 (nxf1b)
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
113646899 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
UBA_8
LRR_4
LRR_9
LRR_6
Motif
Other DBs
NCBI-GeneID:
113646899
NCBI-ProteinID:
XP_027009184
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All DBs
Position
21:complement(4787450..4799810)
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AA seq
639 aa
AA seq
DB search
MATADDSRFYSEHDDRVGPKHRRKGRGPFRAPLYSEQMSKQRHRGGQGGGAGPRSRFDDE
DGDIAMTDDSHDGGPQRRFTPYGRPQNRRNGRRGGKDIRGDGGNHRGRGNRGGGGGGGGG
GGAGGADGPDGLGGRKNWFRMTIPHGKKYEKQWLLNSLQNISSVPFHPIQYHIEGNRAQF
YIEDSSTAYALAKVSRKITDKDGYKVTVLLNQCPPPNLPQQDLKLEDLEHLKQCMSKRFD
GSQQALDLNNIRVDPDLVSLNIDVALNRKNSMQAVLKIIEDNIPELVCLNLSNNRLHKLD
DLTDLVRKVPNLKILNLSHNEIRTERELDRLKGLRLVELSLQRNPLCDHFNDQADYVSAI
RERFPRLLKLDGHDLPAPIGFDLEVAPAVLPPCKPGYFGSEELKGLITYFLQQYYAIYDS
ADRQPLLNAYHDGAAFSLILPFSMQNPSRSSLAEYQKDSRNIKRVKDSTTRFRLLKHTRL
NVVAFLNELPKTQHDIASFNVDVNTYTNTLLSFTVSGVFKEVDGSSRDSYRAFSRVFIAV
PLGSGSLCIVNDEMFIRNATTEEIRRAFVAPAPTPSSSPVPTMSAIQQEMLTAFSLQSGM
NLEWSQKCLQDNDWNFERAGQIFTDLKAQEKIPPIAFIK
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggacgactcccgattctacagtgaacatgatgatcgtgttggacccaag
catcgcaggaaaggcaggggacctttcagagcaccactgtacagcgaacagatgtcgaag
cagagacatcgcggaggccaagggggaggagctggtcccagatccagatttgacgacgag
gatggggatattgcaatgacagatgactctcatgacgggggaccacagcgcagatttacc
ccttacgggaggccccaaaatcgacgcaatggtcgaagaggaggaaaggatataagagga
gatggtggcaaccacagggggcgaggaaatagaggaggaggtggtggtggtggtggtggt
ggtggagcaggcggtgcagatggtcccgatggacttggaggccgtaaaaattggttcagg
atgactattccccatgggaaaaaatatgaaaaacagtggctcctcaattccctacagaac
atcagctccgtgccattccatcccattcagtaccatatagaaggaaaccgtgcacagttc
tacatcgaggattcctcgacagcttacgcattggccaaagtgtccagaaaaatcacagac
aaagatggatataaggtaacagttctgctgaatcagtgcccgcctccaaatttacctcaa
caggacctgaagctagaggatctggagcatttaaagcaatgcatgtccaagcgctttgat
ggttcacaacaggcccttgatttgaacaacataagagttgacccagatttggtttccttg
aacattgacgtggctcttaataggaagaactccatgcaggcagtccttaagatcattgag
gataacatccctgagctggtttgtttaaacctaagtaacaacagattgcataagctcgat
gacctcactgacctggtcaggaaagttccaaatctgaagattttgaatctctcacacaac
gagataaggacagagagagagttggacaggctgaaggggttgagactggtggaattatca
ctgcagaggaaccctctctgtgatcactttaacgaccaggccgactacgtcagtgccata
cgagagaggttccccaggctgctgaaactggatggacacgatctacctgctcccatcggt
tttgatctggaggtcgctccagcagttcttcctccatgcaagcccggttactttggatcg
gaagaactgaagggcctcatcacctatttcctgcaacagtattacgctatatacgactcg
gcagacagacagccgctgctcaatgcttatcatgatggagcagcgttctcgctcattctc
ccgttctccatgcagaacccttccagaagcagtttagcagagtaccagaaagacagtcga
aacatcaagcgagtgaaagattccactacaaggtttcgcttgctaaagcacacgcggctg
aacgtggtcgcgtttctgaacgagctacccaaaactcagcatgacatcgcctcgttcaat
gtcgacgtcaacacctacactaacaccttgctgtcgttcacggtcagtggagtgtttaaa
gaagtggatggcagctctcgtgactcatacagagctttctctcgggtgttcatcgccgtg
cctcttggaagcggaagcctgtgtattgtgaacgatgagatgtttatccgaaatgccaca
acggaggagattcgacgagcgtttgtggctccagccccaaccccctccagcagtcctgtg
cccacaatgtctgccatacaacaggaaatgctcactgcgttctctctacagtcaggaatg
aaccttgagtggtctcaaaagtgcctgcaagacaacgactggaattttgaacgcgctggt
cagattttcacagaccttaaggcccaagaaaagatcccaccgatcgctttcataaagtga
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integrated database retrieval system
