Tachysurus fulvidraco (yellow catfish): 113647527
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Entry
113647527 CDS
T08119
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440
Homologous recombination
tfd03450
Non-homologous end-joining
tfd04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113647527 (rad50)
03450 Non-homologous end-joining
113647527 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
113647527 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfd03032
]
113647527 (rad50)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113647527 (rad50)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
113647527 (rad50)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
113647527 (rad50)
BRCA1-C complex
113647527 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
113647527 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
SKA1
HSCB_C
AAA_29
Intein_splicing
AAA_16
zf-met
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
113647527
NCBI-ProteinID:
XP_047661526
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All DBs
Position
21:48149..68683
Genome browser
AA seq
1313 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIISFFSPLTVLVGPNGAGKTTIIECLKYVTSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGEPIAVQRSMQSTQKGKKAPEFKTLEGVIT
RIKHGEKVSLSSKCAEIDREMISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDDI
FSATRYIKVLETLRQLRLKQSNAVKSCQMELKYLKQNKEKAQEIKEQLSTKEAQLAASKE
SVQRIENQIDPMENRLNDIDDNLGKVMKLDNDIKALDSRKKQMEDDNRELEEKIEQVFQG
SDEQLQEMYENHQLTVKKKVKRLTECQRDLEKAGRECQRMNYIKSDLLVEQGRLQMEADK
QALHIKNRDAQVKSLASYLEMEGYDRAPFSDRQLQSFHKLVRERQDQEAEALSRVMIDLQ
EKETQKQQNIDEIRDKKTGLERTIELKKDIQDRKQQELKNFKFELQRLEGSSSRLQELET
ELTKAERELEKAVQDSTVDHLRMEVQELQREKVELDQNQRKLDQEMETLNIHTTARTQMD
MLKKDKTDKEDQVRKIKSRHNEDLVSLLGHFPNKRELEDWIYSKSREINSIREKLSKLNK
ELASREQNKSHCTAEIRRKEQQLASYEEKLFDVCGSQDFESDLSKLQDDLEKCSKQRAML
AGATAVYTQFISQLTEEGEPCCPVCQRVFPSESELQDVINDMQSKLRLVPDKLKTTEQDL
KRKERKRDDMMALKPVRQTIAELHEKDLPEIRNKLQNVNREIEKFKRDIEEQESLLSLLM
SEEDTAKACLQDISLMHRYQMDLKDVERKIAQHTAKLQGVDLSRTMQHISQEKQEVQHRL
DTTGSKMELKRKLIQDQQEQIQTLKSSVNEIRAEKLQISSNMQKQQQLEEQCVEFSAEIQ
DLQREIRDAKEQVCPLAITLEKLQHEKQDLIERKNQKQSEGQEKLDAMKERVKSLAISER
EIGKYVEEGKDEYKQQKEAELQEINAQLTEAEKQREKINKDMGNIRQDIDTQKVQERWLQ
DNLTLRKRVEELKEVSRRREVLLKEMGNMQVMELRNERRELERKLDDLKKNRSLAVGRQK
GFEEEILHFRKELREDQYCQAEERFRDKMIIMRTTELANKDLDIYYKALDQTIMKFHSMK
MEEINKIIRDLWRSTYRGQDIEYIEIRSDVDENASAGAKRRTYNYRVVMVKGDTSLDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSNYMEHFYRIKKNQDQCSEISKCSITTLNSYLR
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattgagaagatgagcatccttggagtgaggagttttggagttgaggacaaa
gacaagcagatcatttcattcttcagtcctctgacagtgttggtcggaccaaatggagcc
gggaaaacgactattatcgagtgtcttaaatatgtcacttcaggagatttcccacctgga
agtaaaggaaatacttttgtacatgatccaaaggatgctcatgaaacagacgtgcgtgcc
cagatacggctacagttcagagacgttaacggggagcccatagctgttcagcgttccatg
caaagcacacagaagggcaaaaaggcacccgaattcaaaacccttgaaggagtcatcacc
agaataaagcatggagaaaaagttagtctaagctcaaaatgcgctgagatagaccgtgag
atgatctcagctttgggcgtttcaaaggcagtgctcaaccatgtcatcttttgccaccaa
gaggagtctaattggcctctcagtgaaggaaaagccctcaagcagaaatttgatgatatt
ttctcagcaacaaggtacatcaaggtgctggaaacccttcgtcagttaaggttgaagcag
tccaatgctgtcaaatcttgtcagatggagttgaaatatctgaagcagaataaggaaaag
gcacaggagatcaaggaacagctgtccactaaagaagcccagctagcagcttctaaagaa
agtgtacagcgcattgagaaccaaattgaccccatggagaatcggttgaatgacattgat
gacaatctaggcaaagtaatgaaactggataatgatatcaaggctctggacagcaggaag
aaacagatggaggatgacaatcgtgaattagaggagaagattgagcaggtgtttcaaggt
tcagatgagcagctacaagagatgtacgaaaatcaccagctcacagtcaagaagaaagtg
aagaggctcacagaatgccaacgtgatctggagaaggcaggccgtgagtgccagaggatg
aactatattaaatcagacctacttgttgaacagggtcgcctacagatggaagcagacaaa
caggctctgcatataaaaaatcgagatgctcaagtgaagtctttagcttcttacctggaa
atggaaggatatgatcgagctcctttcagtgacagacagctccagagcttccataagcta
gttagagagagacaggatcaagaggcagaggcgctcagcagggttatgattgacctgcaa
gagaaggaaacacagaaacagcaaaacattgatgagattcgtgataagaagacaggtttg
gagaggaccattgagttgaagaaggacatacaggacagaaagcagcaagaactaaagaac
ttcaagtttgaacttcaaagactggaaggttcctcatccagacttcaggagctagagact
gagctcacaaaagcagagcgagagctggagaaggctgtgcaggattccactgtggaccat
ctaagaatggaggtgcaggagctacagagagaaaaggtggaactggatcagaaccagcgc
aaactagatcaggaaatggaaaccctcaatatacacaccacagcacgcacacaaatggac
atgctgaagaaagataaaactgataaagaagatcaagtaaggaagatcaagtccaggcac
aatgaagacttggtttctctgttgggccattttcctaacaagagagagcttgaggactgg
atttatagcaaatcaagagagatcaactccatcagagagaagctgagcaagctcaataag
gagttggcatccagagagcaaaacaagagtcactgtacagccgagattcgacggaaagag
cagcagctggccagctatgaggagaaactttttgatgtttgtggtagccaggactttgag
tctgatctgagcaaattgcaggatgacctggagaagtgttccaagcagagagcaatgctg
gctggggctacagccgtgtacacccagttcatcagccaactgacagaagaaggtgagcca
tgctgcccagtgtgtcagcgtgtcttcccctcagagtctgagctccaggatgtcattaat
gacatgcagtccaaactgcgtctggtgccagacaagctgaaaaccacagagcaggacctg
aagaggaaggagcgtaagcgtgatgacatgatggccctcaaacctgtcagacaaacaatt
gcagagctgcatgagaaggatctgccagagataaggaataaactgcagaatgtgaaccgt
gaaatagagaaatttaagagagacattgaggagcaggagagtctgctgtctctgttgatg
tctgaggaggatacggccaaagcctgtttacaagacatttccctcatgcaccgctaccag
atggatctgaaggatgtggagaggaagatagcacagcatacagcaaagcttcagggagtg
gacctgagccgcaccatgcagcacatcagccaagagaagcaggaggtccagcatcgcctt
gacaccaccggtagtaagatggagctaaaacgcaaactcattcaggaccagcaagaacag
atacaaaccctaaagagtagtgtgaatgagatccgtgctgaaaagcttcagatttccagt
aacatgcagaagcagcagcagctggaagaacaatgtgtggaatttagtgctgaaattcag
gatctgcaaagagaaatacgggatgctaaggagcaggtctgtcctctggccatcacttta
gagaagctccagcatgaaaagcaggatctgattgagcgcaaaaatcaaaaacaaagtgag
ggccaggagaagcttgatgctatgaaagagagagtcaaaagtttggctatatcagaaaga
gaaattggcaagtacgttgaagagggcaaagatgaatacaaacagcaaaaagaggcagaa
cttcaggagataaatgctcagctgactgaagctgagaaacagcgagagaaaatcaacaag
gacatgggcaatatccggcaagatatcgacactcagaaggtacaagagcgctggcttcag
gataacctgaccctgagaaagcgtgtggaagagctaaaggaggtttccaggagaagagag
gtcttactgaaggagatgggcaacatgcaggtcatggagctgcgcaacgagcgacgggaa
ttggagcggaagttggatgacctgaagaagaatcgcagtttggctgtggggcgacagaaa
ggctttgaggaggagatcctgcattttcgtaaggaacttcgtgaggatcagtactgccag
gctgaggagagattccgtgataagatgataatcatgaggaccactgagctggcaaacaaa
gacttagacatctactataaagcactggaccaaacaatcatgaagtttcacagtatgaag
atggaagagatcaacaaaataattcgggacctgtggaggagcacgtatcgtggacaagat
attgaatatatagagattcgctctgacgtggatgaaaatgcctctgctggtgcaaagaga
cgaacgtacaactacagagtggtcatggtcaaaggagacacctctttagacatgcgagga
cgctgcagtgcaggacagaaggttttggcctcgctcatcatacggctggctttggctgag
acattctgtctgaactgtggaatccttgcactagatgaaccaactaccaatctggacagg
gagaacatcgagtctttagcccatgccttggtggaaatcatcaagagtcgctctcggcag
cgtaacttccaactgctcatcatcacccatgatgaggattttgtcgagcttctgggtcgc
tccaactacatggagcacttctacaggatcaagaagaaccaagaccaatgctcagagatc
tccaagtgcagcatcacaactctaaatagctacctgcgttaa
DBGET
integrated database retrieval system
