Tachysurus fulvidraco (yellow catfish): 113647723
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Entry
113647723 CDS
T08119
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113647723 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113647723 (polr1a)
Enzymes [BR:
tfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113647723 (polr1a)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
113647723 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
113647723
NCBI-ProteinID:
XP_027010398
LinkDB
All DBs
Position
17:complement(7446162..7462681)
Genome browser
AA seq
1696 aa
AA seq
DB search
MLFSKETPWRRLECITFGMYSSEEIRKLSVKSITNPLLLDNVGNAAPNGLYDLSLGPADP
KEICTTCMQDFNNCPGHFGHVDLQLPVYNPFLFDKLYMLVRGSCLSCHTLICPRAAIHLL
LNQLKLLDVGAFKEVWDLENVLNQFLEGCPQASGAEIQETLEEFSSPIIKAKYSSHGCAP
VKHICEMKGSLITQFWRIHMVSKKCPNCNAGKSQIRREHNCKLIVTHSGVKNDSGVHKDD
VHVAKRGYLTPSLARDHIIKVWEKEGFFLKHLFTGLAENSPNGFSPDMFFLELLMVPPCR
YRPISRLGDQMFTNGQTVNMQAVLKSNMLIQKLLALIAAEKAGTIDGTPTELEEPTNNTE
PTQMDQTFLTGLPGVTLTDKLYNVWIRLQSHVNIVFDSDMDKLMTEKFPGIRQLLEKKEG
LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPDVHPGASMVINEDGSRTILSRINPTQREAIAKQLLTPSTGQHCMPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFPQDQYMELVYRGLTDKRGR
VKLLPPALIKPQKLWTGKQVVSTLLLNVIPEKHIPLNLTGKAKIPNKAWVKEPPRSVPGY
HPDSMCDSQVVIRNGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTMGVEDILVKPGANKRRKKIIKESVNCGIKALGAAFNLPTAAAENEGRDFWQ
NAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPVGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPHEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPRQFHFIKDNFEVIRKSQCLDEVLAKLDPQLAHSHFKAIKKWKAKHEHSSPRDG
AFLLFSQKKLGKIKAQTEGQLGEITNGRDTAILQLMESWTSMNESSRAKYLKKTAHCPDP
CLAIYRPDVCFGSVSETFESIIESYLSQFNIKQEFYSSSEHVDSERLRHLLHLKWQRALC
EPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSKIKTPMMS
IPVLSNRKALKRVKTLQKKLIRVCLAEVLHKVDVVETLRMDGKRGQKKRIFTVTFHFLPP
ELYQHDKLLSPQQILRFMEDRFFFLLLEAIKKLSAKLASINSVDTRKATSKDMDRDAGDS
TNIADDGDEEVEEGRVVDDEANEGDADAADAKRKEKQEEEVDYESEEGENSGDEDQEEGT
EQPEEGVASEEPSQEKDDNSQPSIQENVTGETQESMRVNKVLQISSSIEAYKYDQQKSLW
CEVTLMLPVSKVHFDLTSLVVAQAQNAVIMETKGITRCLLNEVTNKQGAKELVLNTEGIN
MQEMFKHGNVLDLNRLYSNEIHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLV
ADYMCFEGMYKPLNRYGIQSNSSPLQQMTFETSYKFLKQATMLGLCDKLNSPSACLVVGK
LVKGGTGLFDLKQPLQ
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgcttttttctaaagaaacgccatggaggcggttggaatgcataactttcggcatgtac
tcctctgaggaaatcaggaaactgagtgttaaaagtatcactaatcctctgctcctggac
aacgtcggtaacgccgctcctaatggactctacgatctatcattgggtccagcagaccca
aaagaaatctgcacaacctgcatgcaggacttcaacaactgcccaggacactttggtcat
gttgacttgcagctacctgtctacaaccctttcttatttgataaattgtacatgcttgta
cgtggctcctgcctgtcctgccacacgttgatatgtcctagggctgccattcacctgctt
ctcaaccaactcaaattattagatgtaggagcatttaaggaggtctgggatctcgaaaat
gttcttaatcagtttttagaaggttgtccacaagcatccggtgcagaaatccaagaaact
ttggaggaattcagttctcctattataaaagccaagtacagcagccatggctgtgcacct
gtcaaacatatttgtgagatgaaaggcagcctcatcacccaattttggagaattcacatg
gtatctaaaaaatgccccaactgcaatgccggcaagtcccagatacgtcgagagcacaac
tgcaaattaatcgtcacgcattcgggtgtcaaaaacgacagcggtgtgcacaaagacgac
gttcacgtggctaaacgtggatatctaactccaagcttggcccgagatcatatcatcaaa
gtgtgggaaaaagaaggtttcttcctgaagcacttgttcacaggcctggcggagaacagt
cctaacggttttagcccagacatgttcttcttagaattactgatggttcctccatgcaga
taccggccaatcagtcggctgggagatcagatgttcaccaacggtcagacagtgaacatg
caggcggtgctaaaatccaacatgctcattcagaaactgcttgcgcttattgcggcagag
aaagcagggacgatagatggcactccgacagagctggaggagcctacaaataatacagaa
cccactcagatggatcagacttttttaactgggctacctggagttacccttacagacaaa
ctgtataacgtttggatacgactgcagagtcacgtcaacattgtgtttgacagcgatatg
gacaagctgatgaccgaaaagttccctggaatccgccagctcttggagaagaaggagggt
ctttttaggaagcatatgatggggaagcgagtggactttgctgctcgctctgtaatctgt
cctgacatgtacatcggaactaatgagattggaatacccatggtgtttgcgacgaagctg
acgtacccacagccagtgacaccatggaatgtgaaggagctgcggcaggctgtacttaac
gggcctgatgttcacccaggagcctctatggtcatcaatgaggatggttcccgcaccatt
ctcagccgcatcaaccccacccagagagaggctattgctaagcaactgcttacacccagc
acaggccagcactgtatgcccatgaagatcgttaatcggcacatcaaaaacggcgacgtg
ctcctcctgaatcgtcagccgacactacacagaccatctatccaggctcattgtgcacgc
atcctgcctggagagaaggtgctacggctgcattacgctaattgcaaggcctacaatgct
gactttgatggtgatgagatgaacgcgcactttccacagagtgagctgggtcgggctgag
gcctacacgcttgtcagcacagaccagcagtacctggtgcccaaggatgggaagcccctg
gctggtttaatccaggaccatatggtgtcaggcaccagcatgacaatccgtggctgcttc
ttcccacaagatcagtacatggagctggtctatagaggtcttacagataaaagaggcaga
gtcaagctgcttcctcctgctctgatcaaacctcaaaaactttggactggaaagcaggtt
gtgtctaccctcttgttgaatgtcatcccggagaaacacatccctctgaacctgacagga
aaggccaagattcccaataaagcatgggtgaaagagcctcctcgatccgtgccaggctac
catccagattccatgtgtgactctcaggtggtcattcgtaatggtgagctgctagtgggt
gttctggataaagcgcactatgggagctctgcatatggcttagtgcactgctgctatgag
ctttatggaggagagaccagtggcaagcttctaagctgtttggcccgcctttttaccgcc
tacctacagctctatcgtggctttacaatgggtgtcgaagacattttagtaaaaccggga
gccaacaaacggagaaagaagattatcaaagaatcagttaattgtggcattaaggcactt
ggagcagcctttaacctgcccacggctgctgcagaaaacgaaggccgagacttttggcaa
aacgcccatctaaacattgatcagcgagacttcaacatggtggacctcaaattcaaagaa
gaggtcaatcaagtcaacaacaacatcaacaaggtgtgcatgccagtggggctgcatcgt
tcatttcctgagaacaaccttcagctgatggtgcagtctggagccaaaggttccactgtc
aatacaatgcagatctcgtgtctgctcggtcagattgagttagaaggccgtcgtcctccc
ctgatgccttctgggaaatctctgccttgctttcagccttatgagccacaacctcgctct
ggtggctttgtgactgggaggttcctaactggcataaaacctcatgagttttttttccat
tgtatggctgggcgtgaaggcctcgtggacacggctgttaaaactagtcgttctggctat
ctgcaaagatgtgtgataaagcaccttgagggactggtggttcagtatgacctaacagtg
agggacagcgatggcagcgtggtgcagttcctctatggagaagacgggcttgacattccc
aaaactcagttcctgcagccgcgtcagttccatttcattaaagacaactttgaggttatc
agaaaatcacagtgcttggatgaagtactggctaaactggacccacagttggctcatagt
cactttaaggccattaagaagtggaaagctaagcatgagcattcatctcccagagatggg
gccttcctgctcttctctcagaagaaactaggcaagattaaagctcagactgaaggccag
ttgggagagataactaacgggagagatactgctattttgcagttgatggagagctggaca
agtatgaatgaatccagtcgtgccaagtatctgaagaagacggcccactgcccagatcca
tgtctagctatttatcggcctgacgtctgttttggttccgtgtcagagacatttgaatcc
atcatcgagtcctacctcagtcagttcaatatcaagcaggaattttactcctcatcggaa
catgttgacagtgagagattaaggcacctgttgcatctgaagtggcagagagcattgtgt
gagccaggagaggctgtgggactgctggctgctcagagtattggtgaaccctcgactcag
atgactcttaacacttttcactttgcgggcagaggagagatgaacgtcactctgggtatt
cccaggttgcgtgaaattcttctgatcgctagctccaaaatcaagacccctatgatgagt
attcctgttttaagcaacaggaaagctttaaaacgagtgaagaccctgcagaagaagctt
atacgtgtgtgtctggcagaggttttgcacaaagtggacgtggtggagacgcttcgaatg
gacggtaaaagaggccagaagaagcgaattttcaccgtcacctttcactttcttcctcca
gagctttaccagcacgataagttgctgtcacctcagcagatccttcgcttcatggaagac
agattcttctttttactgctcgaggccatcaagaaactgagtgcaaagctggcctctatc
aattcagtggacactcgcaaagccacatcaaaggacatggatcgggatgcaggggactct
actaatatagcagatgatggagatgaagaagtagaggagggcagagtggtggacgatgag
gcaaatgaaggggatgcagacgcagctgatgccaagaggaaggagaagcaagaggaagag
gttgactatgagagtgaggagggtgagaacagtggggatgaagaccaagaagagggaacc
gagcagccagaagagggggtggcatcagaagaaccatctcaggagaaggatgacaacagt
caaccttccattcaagagaatgtgactggagaaacacaggaatcaatgagagtcaacaaa
gtgctgcagatcagctccagcattgaggcctacaaatacgaccagcaaaaaagcttgtgg
tgtgaggtcacccttatgcttccagttagcaaagtgcactttgacctgacctctctggtg
gtagcacaagctcagaatgcagtaatcatggaaacaaaaggtatcacacgttgcttactt
aatgaggtgaccaataagcagggtgccaaggaactggttctgaacactgagggcatcaac
atgcaggagatgttcaagcatggaaatgttctcgacttgaatcgtttatattcaaatgag
atccatgccatggctaacacgtatggtatcgaagtggctctgagagtcattgagaaagag
attaaagacgtgtttgctgtttacggtatcgaagtggacccacgtcatctttctctagtg
gctgactacatgtgctttgaaggcatgtacaaaccactgaaccgctacggcattcagtct
aacagctccccactgcaacagatgacatttgagaccagctataagtttttgaaacaagct
actatgttgggcttgtgtgataaattgaattcaccttcagcttgcttggtcgtgggaaaa
cttgttaaaggaggaactggactctttgacctgaagcaacccttacagtga
DBGET
integrated database retrieval system
