Tachysurus fulvidraco (yellow catfish): 113648198
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Entry
113648198 CDS
T08119
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X4
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113648198 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113648198 (fip1l1b)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113648198 (fip1l1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
113648198
NCBI-ProteinID:
XP_027011099
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All DBs
Position
7:15091307..15098288
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AA seq
553 aa
AA seq
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MSAEEADKTITPAEPPVGDEEEEWLYGDEGEAKEAEEEEAKLTAAVSAPTAPAAPEENST
GNGVTSQEEAQGDNEDSESDSDDDDDDVRVTIGDIKTGAPQYTSYGAAPVNLNIKTGGSR
PYGAVGAKVKGVDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEETWKA
YCEKQKRLRMGLDSITISSATSKISVQQGRTGNDKEAALPVHVAKTDFTSPSTLYKTGLN
PARISPPQWAGPASQDTLYYTKTTGTIDVIGGQTATISRVEGRRRHNLEGNNIQVISEHT
STEAEATPAKIPTFFPPGPLPPNMPPPPFLPPPPVSQAPPLIPPPRVPITVPPPGFPPPP
SGPPPNLMPTLDNSGHPGGYDCRPVTPYPFPPGAYPPPLQGPVNNWPGMIDNTKQWDYYP
RREKEREKERERERTRDRGHDREREREREHSPTSMAYNSDEERYRYRDYGDRGYERHRDR
SSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGKEPSE
ERAADQENQEAME
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggaagaagcagataaaacaataacaccggcggagcctcctgtgggggatgag
gaggaggagtggctctatggggatgaaggagaggcaaaagaggcagaggaagaagaggcc
aaactcacagccgctgtcagtgcccccactgctcctgcagccccagaggagaacagcact
ggaaatggagtgacgagtcaggaggaggcgcagggtgacaacgaggacagcgagagtgac
agcgatgatgatgatgacgacgttcgtgttaccatcggtgacattaagacaggcgcgcct
cagtacacgtcttatggagctgcgccggttaatctgaacataaagacaggtggcagcagg
ccgtacggagcagtgggagcgaaggtgaaaggtgtggatcttgaggctccaggcagcatc
aatggggtccccgtgctggaggtggacatggagtccttcgaggaaaagccttggagaaaa
cctggtgctgacctgtcggactactttaattatggctttaatgaggaaacctggaaggca
tactgtgagaagcagaagcggctgcggatgggcttagactccatcaccatcagctctgct
accagcaagatttctgttcagcagggcaggacggggaacgataaagaggctgcacttcct
gttcatgtcgctaaaactgactttacctccccatctaccctgtacaagaccggcctaaac
ccggccaggatatcccctccacagtgggcggggcctgcatcccaagacacgctctattat
acgaagactactgggaccattgatgtgattggtggacaaacagccaccatcagcagagtg
gagggacgacgccgacacaatctggagggaaataacatccaggtgatctctgaacacacc
tccactgaagctgaggccacgcctgccaaaatccccaccttcttccccccagggcccctc
cctcccaacatgccaccacctccattcctgcctccgccccctgttagccaggctccaccc
cttattcctccaccaagagtcccgatcaccgtccctcctcctggtttcccgcctcctcct
agcggcccaccccctaacctcatgccaaccttagacaacagcggacatccaggaggatac
gactgccgtcctgtcactccgtatcctttcccaccaggagcttacccaccacccttgcag
gggcctgtgaacaactggcccgggatgatagacaacacgaagcagtgggattattacccc
cgccgagagaaagagcgagagaaggaaagagagagggagaggacgcgggaccgaggacac
gaccgggagagagagagagagcgagagcatagtcccacatccatggcctacaacagtgat
gaggagcgctaccgttaccgtgactacggagaccgtgggtacgagcgtcatcgggaccgg
tcgagccgagagaaagaggagagacaccgtgagaggagacacagagagaaagaggaggga
aggcacaagtcctcacgcagcagtagcagaaggaggcacgacagtgaggaaggagacggc
catcgcaggcacaaacataagaagtctaagaggagtaaagaaggcaaagagccgagcgag
gagcgagcagctgaccaggagaaccaggaggccatggagtaa
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