Tachysurus fulvidraco (yellow catfish): 113648908
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Entry
113648908 CDS
T08119
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113648908 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113648908 (smarcc1a)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113648908 (smarcc1a)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113648908 (smarcc1a)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113648908 (smarcc1a)
PBAF complex
113648908 (smarcc1a)
GBAF(ncBAF) complex
113648908 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
HEAT_GCN1
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
113648908
NCBI-ProteinID:
XP_027012271
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All DBs
Position
25:446203..459255
Genome browser
AA seq
1124 aa
AA seq
DB search
MATAGTAATAAGGTGSGGSAAVQAGPGASVGRKKDGGPSAKFWESSETVSQLETVRLWTG
KHYKKYVQTDSPSCKSLAGLVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKAGGALCH
ILGSAYKFKSEQGWRRFDLQNPSRMDRNVEMFMNIEKTLAQNNCLTRPNVYIASDVDQKQ
ASKLKDIIKRHQGSITEDKSKATHIICPSPAQMEEEEWLRPVMRKDKQVLVHWGNYPDSY
DTWVSTSDVDGEIEDPPSSEKPWRVHVKWVLDTDAFNEWMNEVDYEVDENRKLVNVRQRI
FLKEEESSRTPDRKERKSLAGGKKRRRSPSPPSTPAESRKKGSKKGNTGPHWKRRGHRDD
DEQDEDLTKDMEDPSPVPGMEEVSLPKNVNQKKDSENAPVKGGTMADLDEQEDGSVGSGG
KDDDEQGRIEVNRLMDSSEDNVTEQTHHIIIPSYSAWFDYNSIHEIERRALPEFFNGKNK
SKSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLINYQVD
ADSRPMPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPSAQQMLNFPEKSKEKPTDLQNFG
LRTDMYSKKNPKSKGGSGTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLESSEASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEE
FSRVREEVPAELVEAHVKKVQEAAKSTGKVDPSYGLESSGIAGTAPEEVEKTETAETEKM
ETDSESQQGEKTESKDETDKVSEAAEKPAEGEKVKSETVEKPEGEEDESDGAETKEASAA
DEKEKEEGMEVMEGGKEGEEMTTEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAV
EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQL
KYAEMKARQQMEQQAAAAAAAQHGQIAPPSHLGAPPQGHSAPLPHGAPPPSQIPPSGMNP
GPGFPAMPHLMGPHHPPQTGPMVGPGQPMPGRMIPGAPPVAIPGAPPGVMPPMMSSRHPG
ALNGMYPGPPAPPPPPPPPSSSTAQPDGIPPAPATSLPVRSSEN
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgctggaactgcggcgactgcggcgggcggcacgggctcggggggatcagcg
gccgttcaggcggggcctggtgcttcggtgggccggaaaaaggatggagggccgtcggct
aagttttgggagagttctgaaacggtttctcagctcgagacggttcgtctgtggaccggg
aaacactacaaaaagtatgtccagaccgactctccatcttgtaaatcattggcggggctg
gtggttcaacttcttcagtttcaggaggatgcgttcggacgcagagtgagcaatccagcc
ctcaccaaactgcccgcaaaaagcttcttggactttaaagcaggtggagctctgtgtcac
atcctgggatctgcttacaagtttaaaagtgaacagggatggcgacggtttgacctgcag
aatccatccaggatggacagaaatgtggagatgttcatgaatattgagaaaactcttgca
cagaataactgtctgactcgaccgaacgtgtacatcgcatccgacgtggaccaaaaacag
gccagcaaactgaaagacatcatcaagagacatcagggctccatcacggaggataaatcc
aaagccacacacattatctgtccatctccagctcagatggaggaagaggagtggctgcgt
cctgtcatgcgcaaagacaaacaggtgctggttcactgggggaattatccagacagttat
gatacctgggtttccacaagcgatgtagacggtgaaatcgaggatcctccaagctcagag
aaaccatggagggtgcatgtaaagtgggtcctggacacggacgcctttaacgagtggatg
aatgaggtggattatgaagtagatgagaacaggaagctggtgaacgtccgccagcgcatc
ttccttaaagaggaggagtcttcccgtacacctgatcgtaaggagcgaaagtctctggct
ggagggaagaagaggcgacgttccccgtcccccccgagcacccctgcagagtcccgcaag
aagggcagcaagaaagggaacactgggccacactggaagcgcagaggccatcgtgatgat
gatgaacaggatgaagatctcaccaaggacatggaggatccatctcctgttccgggaatg
gaggaggtttcgctgcctaaaaatgttaatcagaagaaggacagtgagaatgcaccagtg
aaaggaggaaccatggcagatttagatgaacaggaagatggctctgtgggctctgggggg
aaggacgatgatgaacaaggcagaattgaagtaaaccgtctcatggactctagcgaggat
aacgtgactgagcaaacacatcacatcatcattcccagctactccgcctggttcgactac
aactcgatccatgagatagagagacgagccttaccagagttcttcaacgggaaaaacaag
tctaaatccccagagatatatctggcgtatcgtaacttcatgatcgatacgtaccggctg
aaccctcaggaatacctcacgtccacctcctgcagacgcaacctcaccggagacgtgtgt
gctgtcatgagggtgcatgcctttctggagcagtggggtctcattaactaccaggtggat
gcagacagcaggcccatgccgatgggtcctccacccacaccacactttaatgtcctggct
gataccccatcagggctcgttcctctacaccatcgccccccacaggttccctcagctcag
cagatgctcaacttcccagagaaaagcaaagaaaaaccaacagacctgcaaaattttggg
ctcaggacagatatgtactccaagaagaatcctaagagtaaaggagggagtggaacacga
gaatggaccgagcaagaaaccctgctgctgttagaggccctggagatgtacaaggacgat
tggaacaaggtttctgagcacgtcgggagtcggacacaggacgagtgtatccttcacttc
ctgcgtctgcccatcgaggacccgtacctagagagttcagaggcttctctcggacccctc
gcctatcagcccgtccctttcagccaatcaggaaatcctgtcatgagcactgtggccttt
cttgcgtccgtggtggaccccagagtggctgcggctgctgctaaggctgctcttgaggag
ttctcccgtgtcagagaggaagtcccagctgagctggttgaggctcatgtaaagaaagtg
caggaagcagcgaagagcacagggaaagtcgacccctcctacggcctggagagtagcggc
attgcaggaacagcaccagaggaggtggagaaaaccgaaactgcagaaacggagaagatg
gaaaccgattcagagtctcagcagggagagaagaccgagtccaaggacgaaactgacaaa
gtgagtgaagcagcagagaaaccagcagagggagagaaagtgaagagcgagactgtagag
aaacccgagggtgaggaagacgagagcgatggagcagagacgaaggaagcgagtgctgca
gatgagaaagaaaaggaggagggtatggaggtgatggagggagggaaggagggagaggaa
atgacaacagaggagggcaagaagaagctggagcttgatatcggagagggaaacatcgcc
actgctgcagctgctgctctcgcctctgctgccaccaaggctaagcacttggcagcggtg
gaagagagaaagatcaagtctctggtggctctgctggtggagacacagatgaagaagtta
gagattaaactgcgtcactttgaggagttggagaccatcatggatcgagagaaagaggcg
ctggagttgcagaggcagcagctgctgactgaaagacaggcgttccacatggagcagctt
aagtacgcagagatgaaagcacgtcagcaaatggagcaacaggcggcggcggctgctgca
gctcagcacgggcagatagcaccaccctcccatcttggagccccgccccaaggacatagt
gctcctcttcctcatggtgcaccacccccatctcaaatacccccatcaggtatgaaccct
gggcctggatttcccgcaatgccccacctcatgggaccccaccatcctccacagacaggg
ccgatggttggaccagggcagcccatgcctggccgtatgattcctggtgcgccccctgtg
gcgatacctggagctcccccaggtgtgatgcctcctatgatgagctccagacaccccgga
gctctaaacggcatgtaccctggtcctcctgctcctcctcctcctcctcctcctccttcg
tcttctactgcacagcctgatgggataccgccagctccagcaacctcacttcctgtgcga
tcatctgaaaactaa
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