Tachysurus fulvidraco (yellow catfish): 113648930
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Entry
113648930 CDS
T08119
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113648930 (sox1b)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113648930 (sox1b)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
113648930
NCBI-ProteinID:
XP_027012262
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All DBs
Position
18:complement(11135530..11138390)
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AA seq
343 aa
AA seq
DB search
MYSMMMETDLHSPAPQTNTGAGHTGQNAAGKLSQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLASSAGGGGVTLGMSTAQRLESPAGHGGGAGAASYAHVNGWANGAYTAAAAAA
MMQEAQLAYGQHASAGAAHHHGHHPHHHGHHHPHHQHAASAQPVHRYDMSALQYSPMSNS
PSYVSASPSTYAMQYTQHQSSVSAAAGAVGALGSLVKPEPSSSPPLSGASRAPCPGDLRE
MISMYLPAAEAGDAAVQSRLHALPQHYQTTAAAINGTVPLTHI
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacttgcattccccggcaccccaaacgaacacgggt
gcggggcacacggggcaaaacgctgcggggaaattgagccaggagcgcgtcaagcgcccc
atgaacgcgtttatggtttggtcccgcgggcagcggcggaagatggcacaggaaaacccc
aaaatgcacaactcggagatcagcaagaggcttggggccgagtggaaggtcatgtcagag
gcggaaaagcggccttttattgacgaggcgaagcgcctgcgcgccatgcacatgaaggag
cacccggattacaagtaccggccacgcaggaagaccaaaacgctgcttaaaaaggacaaa
tactccctggctggcgggctgctcgcaagttctgccggcggtggcggtgtgactctgggg
atgagcacagcgcagaggttagagagtcccgcgggtcacggtggaggcgcaggggcggcg
agttacgcacacgtgaacggctgggctaacggtgcgtatactgcagccgctgccgcagcc
atgatgcaggaggcgcagttagcctacggtcagcacgcaagcgctggggccgctcaccat
cacggacatcacccgcatcaccatggacatcaccaccctcaccatcagcacgccgccagc
gcgcagcccgtgcaccgctatgacatgagcgcgctgcagtacagccccatgtcgaactct
ccgagttacgtgagcgcctcaccgtcgacctatgccatgcagtacacgcagcaccagagt
tctgtctcggcggcggcgggagccgttggcgcgctcggatcgctcgtgaagcccgagcca
agctctagccctcccctcagcggcgcatcccgcgcaccctgtccaggtgacctgcgcgag
atgatcagcatgtacttaccggcggcggaggctggagacgcggctgttcagagcagactg
catgcgctgccgcaacactatcagaccactgcagctgccattaacggaaccgtcccactg
acgcacatttaa
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