Tachysurus fulvidraco (yellow catfish): 113648947
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Entry
113648947 CDS
T08119
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113648947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfd04121
]
113648947
Enzymes [BR:
tfd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113648947
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
113648947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
fn3
ANCHR-like_BBOX
zf-RING_UBOX
TRIM_CC
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4
PRY
FN3_DSCAM-DSCAML_C
zf-RING_2
Pur_ac_phosph_N
zf-C3HC4_3
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
113648947
NCBI-ProteinID:
XP_027012283
LinkDB
All DBs
Position
18:complement(7955755..8006004)
Genome browser
AA seq
733 aa
AA seq
DB search
MRLCMVRSSPHSQFGSLGLIIRRHVAAARSREKSVDSCLVLPDFANAIPSSLHLKRMETL
ESELTCPICLELFEDPLLLPCAHSLCFNCARRILVSHCTTGEPADAICAFQCPTCRYAIS
LSPQHGLDALKRNVTLQNIIDRVQRASTSATLLLSSSGHSSPGDSPLGAMTTATAPSSPA
ELVQCQFCEQEPPQCAVKTCVTCEVSYCEECLRATHPNKKPFTGHRLIEPLPDSHLRGLQ
CLEHEEEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALNERYEKLKQTLDSNLSNLIKRS
SELESLMGKLIQTCQHVEVNASRQEGKLMDECDILISIIQDRRQIIGSKIKEGKAVRLRK
LAQQIGNCKQCIERSSALITQADQTLKETDHARFLQTAKSISERVSMATASSQVLIPEIN
LTDTFDTFALDFTREKKMLENLDYLTAPSPPGIREELCTASYDTITVHWTSDDEFSVVSY
ELQYTIFTGQSNIVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFIVKAINQAGSRSS
EPGTLKTNSQPFKLDPKSAHRKLKVSHDNLTVERDEISSKKSHGQERFSSHSSYGVVGNV
YIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNPFSWVLCRCNNSWVVRHNSKEMA
IDPSPHLRRVGVLLDYDVGSLAFYDAVSSQHLHTFHITFTQPVCPVFNVWNKCLTVLTGL
PIPDHLEGVEAFD
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaggctctgcatggtgagaagctcgcctcattctcaatttgggtcgctgggcttgatc
atcaggagacatgtcgctgccgccaggtctcgggagaaatccgttgatagctgcctggtt
ctcccggattttgctaatgccattccttcttcgcttcacctaaagaggatggaaaccctg
gagtcggagctgacgtgcccgatctgcctggagctgtttgaggaccccctgctattgccc
tgtgcccacagtctgtgcttcaattgtgctcgccgaatcctggtctctcactgcaccaca
ggtgagccagccgacgccatctgcgcctttcagtgccccacgtgccgctatgccatttca
ctgagcccacaacacggcctggacgcactcaagcgcaacgtcaccctccagaacatcatc
gaccgtgtccaacgggcttcgacttctgccacacttcttctgtcctccagcgggcacagt
tccccaggcgacagccccctaggtgccatgacgactgccactgcaccctcgtcacctgct
gaactggtgcagtgccagttttgtgagcaggaaccgccgcagtgtgctgtgaagacctgc
gtaacatgtgaggtgtcttactgtgaggagtgcctgcgtgccacccaccccaacaagaaa
ccgttcactggacatcggcttatcgaacccttgcctgactcgcacctcagaggcctgcag
tgccttgaacatgaggaggagaaagtgaacatgtactgtgtcacagatgagcagctcatc
tgctccctttgcaagttggtgggacgtcaccgtgaccaccaggtggcagcgctaaacgag
cgctatgaaaaactgaagcaaacattggattccaacctcagcaatttgatcaagaggagc
agtgagttggagtcactaatggggaagctgattcagacctgtcagcatgtggaggtgaac
gcatcacgacaagaaggaaagctgatggacgaatgtgacatcctgatcagcataattcag
gacaggagacaaattattggatccaaaatcaaagaggggaaggcggttcgtctgcggaag
ctagcgcaacaaatcggcaactgcaagcagtgcatagagcgatcgtccgctctcataact
caagcggaccagacgttgaaagaaaccgatcacgctcgcttcctccagactgccaagagc
atctccgagcgagtctcgatggcgacggcgtcttcccaggtcctgatacctgagattaat
ctgacggacacgtttgacacctttgcgctggattttaccagagagaagaagatgctagaa
aatcttgattacctcacagcacccagtcctccaggtatccgagaggagctgtgcacggcc
tcctacgacactataaccgtgcactggacatctgatgacgaattctcggtcgtttcttat
gagcttcagtataccatctttactggccagtcaaacattgtcagtctctgcaactccgct
gacagctggatgatcgtgcctaatatcaagcagaatcattacaccgttcacggcctgcag
agcggcaccaagtacatcttcatcgtcaaggccattaatcaggcaggaagtcgcagcagt
gaacctggaacactcaaaaccaacagtcagccatttaagcttgacccaaagtctgcacac
aggaagctaaaagtgtctcacgacaacctgacggtggagcgggacgagatatcctcaaag
aagagccatggacaggagcgcttcagcagccatagcagctacggtgtcgtaggaaacgtc
tacatcgacagtggacgccattactgggaggctctgatcggaggcagcacttggtatgca
gtgggcatcgcctataagtcagcacccaagcatgagtggattgggaagaaccctttttcg
tgggtgctttgtcgttgtaacaactcctgggtggttcgccacaacagcaaagagatggcc
attgatccttcaccacacctgagacgagtcggcgtgctcctggattacgacgtcggctct
ctggcgttctacgatgccgtgagctctcagcacctccacaccttccatatcaccttcacc
caacctgtttgccctgtatttaatgtctggaacaaatgtcttacagttctaacaggtctg
ccaatcccagatcatctggaaggtgtagaggctttcgactga
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