Tachysurus fulvidraco (yellow catfish): 113649045
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Entry
113649045 CDS
T08119
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tfd03009
]
113649045 (pdcd11)
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
90S particles
Other 90S particles
113649045 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
OB_RRP5_4th
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
TPR_19
TPR_14
HAT_Syf1_CNRKL1_C
OB_RRP5
NRDE-2
ARM_TT21_5th
TPR_12
DUF7017
ARM_TT21
TPR_16
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
113649045
NCBI-ProteinID:
XP_027012428
LinkDB
All DBs
Position
18:complement(9235993..9260330)
Genome browser
AA seq
1821 aa
AA seq
DB search
MAAEEEDFPRGGAVKKTSEQKSAKSNKFRVEVDNLFETQEPVVKKKKKKVARKDEDENPA
KRQKTEGGLKLNTTTSTEILHMKNLKLGTVLLGCVREILNFEVVLGLPSGMKGYMPISSI
CDAYTKILSSALDSGTDLEDLVSPAHLLTPGQLVRCVVMTLDLSKQGFVCLKLSINPKDV
NKELNSSSLKAGMTLGGCVESVEDHGYLIDIGVSGTKAFLPKDETATAKKDLKVGQYVTA
KLEEVKNDGRVVRLSVNSTAVNQTCAETHHGWTLSNLLPGLLVQACIRKVTTHGLIVTFL
SNYTGLVDFMHVDPEKLATYKVGDEVKARILYVDPSSRLVGLSLRSYLLSPGGGVLDIVT
NERTGEVLKGCKMTAVHHQSGAVMELPDGTTAFVHKSHLKESKGEFNPNRLLAQPEHTLR
ILDYSPMEQIYMATLRKAVIEMPFFSYQDIKAGQTVQGTVMSLERYGLHVKITDHIKGLV
PRIHLADIILTNPEKKYKAGMRIKCKVLSVDPQNKKITLSRKKALMESQLPVILTYRDAR
VGLVSHGFIVCIKDFGCIVRFLGEVKGLVPTSELTSEPGDNPQGLFYIGQVVKAKVLKCD
ADKEKLLLSFKAVTARDLEKVQRVKFNFEFGKKVEVIVQKKSQTGLEVSILPEDMPALLP
TSHLSDHMSNCSLLWTALQEGDTISNVVCLRRDKESIILSKKPSVIAALEAENLVSSFSE
LQVGTEMLGWVKSIMSYGVFVDFPHGLFGLAPKATMSDKFITDTAGVFEVGQTVLAKVTN
LDEEKRRFLISLKVSDVSWSENDAKARLIQGQSERTSVYDALTSRGDSDLLQQLSSVSLG
DKLKMTVDVTREDGSVVLTSDQLSYATVLASKYHVADVNTTPGNQVTAVVLHVDFLSSEV
HVSLLPNLTVKKKKLTADSQHTATVQYTDKDFAVISLGDTGHLTVIPTSDHLNQTFSSDA
EKLTVGGNVTVSVTDPCCEHLGGRALVVKQAKSSASRNRGEVHKYKIGDFVTAKIKTIKP
LCVLVTLPDGVTGSVHVSQITESPKVGGLPTSSLKVGAEVKGRVIGARDIHNHRFLPISH
PNFVFSQPELTLLPSKLDASLPATSLENKPDPQSYKPGQEVMCYVSKYVQKSKCLEVAVF
PNVFGFVDLLAMITKPKEATHPQKLYKHGQCVSAKVVTINPKRPNQLKLSFTGTHTLEKG
AVTMGMVWKKIPHVGLILNLPFGNSGMARITDLSDEYVDAPFEQYKEGQVVRCCVVGEEG
EKFQLSLRLSRIRSGKALKVKDVDVSTVSELQEGQIIRGYVKNVGEKGIFVRLSRSVTGR
VLFQHATNYFAVDSDLFPQHVSQNALLTTKVLHIEAKTGHVDLSLLPEDTGKPDILPESL
GLPLRLRGKDKEKHDKKTAAKKRKMAENMQKEGGPQKKLKKEDDDAESKKKKSAEEKETN
SQAEDQDSGVEVYFREKGTEKKDKTKKKGKSTAAPSEEPSRLQVASGFSWDVALSSLKPA
TSAQNAYESSDDEQEDSKTAKKSRQEAKLERKEAELKLSKREAELMEPTSRPESAESFER
LLLSSPDSSLLWLQYMAFQLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENM
YGTEESLQKVFERAVQYCEPIPVYQQLADIYTKSNKIKEAEHLYKNMVKRFKQEKAVWQS
YGSFLLRQGQSDAANALLQRALQSLSNKEHVDLIVKFARLEFQYGNEERAKAMFEKVLSS
YPKRTDLWSVFIDLMMKHGSQNDIRALFDRVVHLSVSVKKVKFFFKRYLDYEKIHGTPES
VQAVKQKAMEYVETKGTDAAN
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgaagaagaagatttccctcgtggtggagcagtgaagaaaacatctgagcag
aaaagtgctaaatctaacaagtttcgagtggaagtggacaatctcttcgagactcaagag
ccggtagtgaagaagaagaagaagaaagttgcgagaaaggatgaagatgaaaatccagcc
aaaaggcagaaaactgaaggtggtctgaagctgaacacaacgaccagcacggagatcctg
catatgaagaatctgaagctgggcacggtgctgctcggctgtgtgagggagatcttaaac
tttgaagttgtgctcggtctccccagcggaatgaaaggctacatgcccatctcgagcatt
tgtgatgcctacacgaagatcctgagcagcgcgctggactctgggacagacctcgaggat
cttgtgtcccctgcccacctcctcaccccggggcagttggtcaggtgtgtggtgatgacg
ctggatctgtccaagcagggctttgtctgtctcaaactgtccatcaaccccaaagatgtc
aacaaggagctgaactccagctctctgaaagcaggcatgactctgggtggctgtgtggag
agcgttgaggatcacggttacctgatagacatcggagtgagcggaaccaaagcttttctg
cccaaagatgaaaccgccacagcaaaaaaagatctgaaggtgggtcagtacgtgacggct
aagctggaggaggtgaagaacgatggaagggtggtgcggctttctgtcaactctactgcg
gttaaccaaacctgcgcagagacgcatcacggctggacgctgagtaacctcttacctggg
ctgctggtccaagcctgcatcaggaaggtaacgactcacggcctgatcgtaacattcctc
tcgaattacaccggcctggtggacttcatgcacgtcgaccctgagaaattggccacgtac
aaggtcggggacgaggtcaaagctcgtatcctgtatgtggacccgtcgtctcgtctggtg
gggctttccctgcgcagctacctcctatcaccagggggcggcgtgttagacatcgtgacg
aatgagcgaacaggggaggtgctgaagggctgcaagatgactgctgtacaccaccaatcc
ggagccgtgatggagctgccggacgggaccacggccttcgtgcacaaaagccatctgaaa
gaatccaaaggggaatttaacccaaaccgactcctcgctcagcctgaacacacactgaga
atattagactacagcccaatggagcagatctacatggccacgctgcgcaaagcagttatc
gaaatgcctttcttcagctatcaggatattaaagcaggacagaccgtccagggcacggtg
atgagcctggaaaggtacggcctgcatgtgaaaatcacagaccacattaaaggcctcgtt
cccagaattcacctggcggacatcatcctcaccaaccctgaaaaaaagtacaaggcaggc
atgaggatcaaatgtaaagttttatcagtggacccccaaaacaaaaagatcactctaagc
aggaaaaaagctctgatggagtctcagctgcccgtgatcctgacgtacagagacgctcgt
gtggggctcgtctcccacggcttcatcgtctgcatcaaggattttggctgcatcgtaaga
tttttaggcgaggtcaagggcctggtgccgacgtccgagctgacctcggagcccggcgac
aacccacagggtcttttttacataggacaggtggtgaaagccaaagtgcttaagtgtgac
gctgacaaggagaaactgctcctgtcctttaaagcagtgactgcgagagacctcgagaag
gtgcagcgtgtcaagttcaactttgaattcggaaagaaagtggaagtgattgtacaaaag
aaatcccagactggacttgaagtgtctattctcccagaagacatgccggctctgcttccc
acatcgcacctctctgaccacatgtccaactgctctctgctgtggacggcgctccaggag
ggagacaccatctcgaacgtcgtgtgtctgagacgagacaaagaaagcatcattctcagt
aagaagccgtctgtgattgcggctctagaggcagaaaacctggtttcgtctttctcagag
ctgcaggtggggacggagatgctgggctgggtgaagagcatcatgtcctacggcgtcttc
gtcgacttccctcacggcctgtttggcctcgcacccaaagctactatgagcgataagttc
atcacagacactgcaggagtgtttgaggtcgggcagacggtactagccaaggtgaccaac
ttggatgaggagaaacgccggtttttgatcagcctgaaggtgtcggacgtgagctggtca
gagaacgacgccaaggccagactgatccagggtcagagcgaaagaacgtccgtgtacgac
gcattgacctcgagaggtgactcggacttgctgcagcagctctcgtctgtgtcactcggg
gataaactgaagatgacggtggacgtgacacgagaggacggctcggtcgtcctgacctca
gatcagctcagctacgccacagtgctggcctccaaataccacgtagcagatgtcaacacc
accccaggcaatcaggtcaccgccgtagtgcttcatgttgactttttgtcctctgaagtc
cacgtgtcccttctgcccaatctcacggtgaagaagaaaaagttaacagctgactcccag
cacaccgctacagtccagtacacggacaaagactttgccgtaatctcattgggcgacacc
ggtcacctgactgtgattccgacatccgaccacctaaaccaaacgtttagctccgatgca
gaaaagctgaccgtgggtggtaacgtaaccgtgagcgtaaccgacccgtgttgtgaacat
ctgggtggacgagccctcgtggttaaacaagccaaaagcagcgcttctcggaaccgaggc
gaagtgcacaaatacaagatcggggactttgtgacggcaaagatcaagaccatcaaacct
ctgtgtgtactcgtgactttgccggatggagtcacgggcagcgtgcatgtttctcagatc
actgaatcgcccaaagttggaggattacccacgtcgtccctgaaggtcggggctgaagtt
aagggcagggtcatcggtgctcgtgacatccacaaccacaggtttctccccatcagccac
cccaactttgtcttctctcagcctgagctcacgcttctccccagtaaactggacgctagc
ttgcctgcaacatcactggagaacaaacctgacccacagagctataaacctggacaggag
gtcatgtgctatgtatctaaatacgttcagaagtcaaagtgtctcgaggttgccgtgttt
cccaacgtttttggattcgtggacttgctcgctatgatcactaaacctaaagaggcaaca
catccacaaaagctctacaaacacggccagtgcgtctccgctaaggtcgtcacgatcaac
cccaaaaggccgaaccagctcaaactttcctttacagggacgcacactctcgagaagggg
gccgttaccatgggcatggtgtggaaaaaaatcccccacgtgggcttgattctgaatctg
ccgttcgggaattccggcatggcacgtattaccgatttatcagacgagtacgtggatgct
ccgtttgagcagtacaaagaaggccaggtggtcagatgctgtgttgtcggtgaagaaggc
gaaaagttccagttgtctctgcgtctgtccaggatccgcagcggaaaagctttaaaggtg
aaagacgtggacgtcagcaccgtctccgagctccaggagggtcagatcatccgaggttat
gtaaagaacgttggagaaaagggcatcttcgtgaggttatccagatcagtcacaggaaga
gtcctgttccaacacgccacaaactactttgcagtcgactccgacctgttcccgcagcac
gtctcccagaatgcactgctgaccaccaaagttctccacattgaggcaaagaccggtcac
gtggacctctccttgctcccagaggacacgggaaaaccagacattctcccagaatccctc
gggctcccactgcgcctgaggggaaaggacaaggaaaagcacgacaagaagactgctgcg
aagaagcgcaagatggctgagaacatgcagaaagaaggcgggccacagaagaaactaaag
aaagaagacgacgatgcagagagcaagaaaaagaagtcagcggaggaaaaagagacgaac
tcgcaagctgaagatcaggacagtggagtcgaggtgtattttcgagaaaagggcacagag
aaaaaggacaaaacaaagaaaaaaggtaaaagcacagctgcgccttcagaagagccaagc
aggctacaggtagcatctggtttctcctgggacgtagcgctgagctctctcaaacctgca
acttcagcccaaaacgcgtacgagtccagcgacgacgagcaggaagacagcaagactgcc
aagaagtcccggcaggaggcgaagctggaacggaaggaagcggagctgaagctcagcaaa
cgtgaggcggagctcatggagcccacgtcgcgaccggagagcgcggagtctttcgagcgg
ctgctgctctcgtcaccagactcgtctctgctctggctacagtacatggcgttccagctg
caggccacacagatcgagcaggcgcgcgctgtagccgagagagccctcaaaaccatctcc
tttagggaggagcaggagaagctgaacgtgtgggttgctctgctcaacctggagaacatg
tacggtactgaagagagccttcaaaaagtgtttgagcgagccgttcagtactgtgagccc
atacctgtctaccagcagctggccgatatttacaccaagtccaacaagatcaaggaagcc
gagcacctttataagaacatggtgaagcgcttcaagcaggagaaggccgtgtggcaaagt
tacggctcctttttactgcgtcagggacagagcgacgctgccaatgctctcctccagagg
gcgctgcagagtctgtccaataaagagcatgtggacttgatagtcaaatttgctcggttg
gaattccagtacgggaacgaagagcgagccaaggccatgtttgaaaaagtcctgagcagc
taccccaaacgcacggacctgtggtccgtcttcatagacctgatgatgaagcacggctca
cagaatgacatcagggccctgtttgatcgcgtggtccacctgagtgtatcggtgaaaaag
gttaagttcttcttcaagcgctacctggactacgagaagatacacggcacaccagagagc
gtccaagcagtcaagcaaaaagctatggagtatgtggagaccaaagggactgacgccgct
aactag
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integrated database retrieval system
