Tachysurus fulvidraco (yellow catfish): 113649046
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Entry
113649046 CDS
T08119
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113649046 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113649046 (taf5)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113649046 (taf5)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113649046 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
113649046 (taf5)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
113649046 (taf5)
STAGA complex
113649046 (taf5)
TFTC complex
113649046 (taf5)
SAGA complex
113649046 (taf5)
SLIK complex
113649046 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
VPS8_N
CDK5RAP3
LisH_TPL
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
113649046
NCBI-ProteinID:
XP_027012430
LinkDB
All DBs
Position
18:complement(9262332..9268762)
Genome browser
AA seq
737 aa
AA seq
DB search
MAAVHDGPSDIESEKETKPDVLSDESASNLPGIMSGTLPTSLHGSTTASAVAPKTEEQQQ
TLLAVLQFLKRNKLTESVDILRREAGLQEEPEEERGAEAAAPGLNSGCGDASSLLSRVSA
QSGAPAKGGDDQPDVSVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPL
FVHMYLELVYNNHETEAKAFFEKFSGDQECYYHDDLHVLSGLTKKAHMKGNETLLDFRTS
RFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKTQIDSTSGSLAGEA
VREANKAKVYYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGSKSKKQDPNAPQ
QNRIPLPELKDSDKLDKIMYMKEATKRLRLGAETLPSICFYSFLNAYQGLTAVDITDDSS
LIAGGFADSTVRVWSVTPKKLRKVKSSAELGLIDKESDDVLERIMDEKTSSESKILYGHS
GPVYAVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSPHGYYFVSG
GHDRVARLWATDHHQPLRIFAGHLSDVTCTRFHPNSNYLSTGSADRTVRLWDVLNGNCVR
IFTGHKGPVHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMFGDLKGHSDTVYALKFSRDG
EILASGSMDNTLRLWDVTRAIDDVETDDFTATTGHIHLPDNSQELLLGTYLTKSTHVIHV
HFTRRNLLLAAGAYTSQ
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgttcatgacggaccgagcgacatcgagagcgagaaagaaacaaaacctgac
gttctgagcgacgagtcggcatcaaacctgcctggaataatgagcgggacgcttcccacg
tcgctgcacggctccacaacggcttctgctgtagcaccgaagacagaggagcagcagcag
actttactcgccgtgctgcagttcttaaagcggaacaaactcacggagtcggtggatatt
ctgcggcgcgaggcgggtttacaggaagagccggaggaggagcgcggggcagaagctgca
gctccggggctcaacagcggctgtggggacgcgagctcactcctcagcagggtgtctgct
caaagcggcgctccggctaaaggtggagacgaccagccagatgtcagcgtcgtcctctcg
gcatacagtcagcagggggatccttcgttgtatcaggtgtactacagcgggctgaagaag
ttcatcgagtctgtgctggactgccacagggccgagctgtcgcagctcttctacccgctc
ttcgtgcacatgtacctggagctggtttacaacaaccatgaaactgaagcgaaggcgttt
ttcgaaaagttcagcggtgaccaggaatgctactaccacgacgacctgcacgtgctctcc
ggcctcaccaagaaggcgcacatgaagggcaacgagactctgctggatttccgcacgagt
cgcttcgtgctgcggatttcccgcgactcctaccagctgctgaagcggcaccttcaggag
cggcagaacaaccagatctggaacatcatccaggagcacctttacatcgacatcttcgat
ggcatgccacgcagcaagactcagatcgacagcacgtccggcagcctggctggagaagca
gtccgagaggccaacaaagctaaggtgtactacgggttgctgaaggagccagagatcgag
gtccctctcgacgatgaagacgaagaggccgagaacgaagagggcaaacccaagaagaag
aaacccaagaaggacagcatgggttcaaaaagcaagaagcaggatcccaacgcaccacaa
caaaacaggattcctctaccagaactgaaggactctgataaactggacaaaatcatgtac
atgaaagaggccacgaagaggcttcgtctgggtgccgaaactctgccctccatatgcttc
tactcgttcctcaacgcttaccagggtctgacagctgtggacattacagacgactccagt
ctgatagccggaggcttcgccgattccacggtgcgcgtctggagcgtgacgcccaagaaa
ctccgcaaggtcaaatcctctgcagaactcggtctcatagacaaggagtcagatgacgtg
ctagaaaggataatggatgaaaaaacctccagcgagtccaagatcctgtacggccacagc
gggccagtgtatgctgtcagcttcagtccagacaggaattatctgctgtcaagttcagaa
gatggcaccatcaggctgtggagcttgcagacttttacctgtctggtagcttataaagga
cacaattatccagtgtgggacactcagttctctccacatggatactactttgtgtctgga
ggacatgaccgagtggcacggttatgggccactgaccatcaccagcctctgcgtatattt
gccggccatctctctgacgtcacctgcacccgcttccacccgaactctaactacttgtcc
acgggctcagccgatcgcaccgttcgactctgggatgtcctgaacggcaactgcgtccgc
atttttaccggacacaagggacccgtccactcgctggcattctcacccaacgggaagttc
ctggcgtctggttcaaccgacggccgggttctgctgtgggacattggccatggactcatg
tttggtgatttgaagggtcacagcgacacagtctacgcgctcaagttcagcagagatggc
gagatcctcgcctcaggctccatggacaacacgctccggctgtgggacgtcaccagagcc
atcgacgacgtggaaacagacgatttcacagcaaccacgggtcacattcacttaccggac
aactctcaggagttattactgggaacgtatctgaccaaatccacccacgtcatccacgtt
cacttcaccagacgcaacctgctactggctgccggcgcgtacacctcccagtga
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