Tachysurus fulvidraco (yellow catfish): 113649194
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Entry
113649194 CDS
T08119
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113649194 (prdm1b)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
113649194 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
zf-C2H2_4
SET
zf-met
zf-C2H2_jaz
zf-C2H2_6
C2CH-3rd_BIRD-IDD
Zn_ribbon_19
zf-Di19
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
113649194
NCBI-ProteinID:
XP_027012649
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All DBs
Position
15:2920510..2934862
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AA seq
684 aa
AA seq
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MKQGSCVRSVSEWRQVDFALNCTHVVHDQPSEPGFHLPRAMTSIPHNLTFRYDPDNEVTG
VFTKHFLPQGTRLGPLQGDIYAKDAVPPRASRKYFWRIYSSGQLHHFIDGCDVQRSNWMR
FVNPPRSPAEQNLVACQNGPDVFFYTFRPVEPQHELLVWYKQEFTRRLCGHTDKQTDSGK
MKHFGGDVLEADLQKHRLHQWTCHPKQASHHYSLHSQEEVTKEGKDKAGEVVEAEEKIDV
EAIEQDTPPSTPDQHLMDSDMRDAQESTHKSQPHLVSRSCPERDLPQYPQGYYSPREDLT
RYPSLMHTYPFLPPFDTHYPLLLSPYTHPITSVPPPRGSFPYSNMLAREALPFSAMTQSC
LLPGYQPSPALHPHTSLEGQPPSASPPQGAPATPELSPTIKHYPGSESLSEEAINLSLTA
TPKTRSLTPSSSSVSPHSQGYKSLPYPLKKQNGKIKYECNVCFKTFGQLSNLKVHLRVHN
GERPFQCPLCKKCFTQLAHLQKHHLVHTGEKPHECEVCQKRFSSTSNLKTHLRLHSGEKP
YQCKVCGTKFTQYIHLKLHRRMHSSSERPHCCPLCHRGFLHHFSLRLHRHSGCCTANSQP
ETSELRYAAEILERFDVSAEAEALAENASETEVDATLERWLELEDRPKPGHFKASDSDLV
KTSEPGKWQERASVVRFGGEARVQ
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaggggtcgtgtgtcaggagtgtgagcgagtggcgccaggtggattttgctctt
aactgcacccacgtggtccacgaccagccgtctgagcctggcttccaccttcccagagcc
atgacctccatcccacacaatctcaccttccggtacgaccctgacaacgaggtgacgggt
gttttcactaagcacttcctcccccagggcacacgcctcggcccgctgcagggtgacatt
tacgccaaagacgcggtgccacctcgtgctagcaggaaatatttttggaggatttactcc
agcgggcagcttcaccacttcattgatggatgtgacgtacagcgcagcaactggatgcgt
ttcgtcaacccgccgcgttcgccggccgagcagaacctggtggcctgccagaatggacct
gatgtcttcttctacaccttcagacctgtggagcctcagcacgagctgctggtttggtac
aaacaggagtttaccaggaggctatgtggacacacggacaagcaaacagacagcgggaag
atgaagcactttggtggtgatgttcttgaagctgacctccagaagcaccgcctacatcag
tggacctgccatcccaagcaggcatcgcaccattacagcctacacagtcaggaagaggtc
acgaaggaaggaaaggacaaggctggggaggttgtggaggctgaggagaagattgatgtg
gaggccattgagcaggacacaccacccagcactccggatcagcacttaatggactctgac
atgagggatgctcaggaaagcacacacaaatcacaacctcatcttgtttcccggtcgtgt
cctgaacgggaccttccgcagtatccccagggctattacagccccagggaagacttgaca
cgatacccttctctgatgcacacctacccttttttacctccttttgacactcattatccc
cttcttctaagcccctatacacaccccatcacatctgtgccaccccccagaggatcattc
ccctacagcaacatgctggcaagagaagccttgcccttttcagccatgactcagtcatgt
ctgcttcctggttatcagccctctcctgccctacatcctcataccagtctggaagggcag
cctccgagtgcatcacctccacaaggtgccccggcaacccctgaactctcccccacaatc
aagcactacccggggtctgagagtctgtccgaggaggcaattaacctcagtttgactgct
acaccaaagaccagatctctgacaccatcatcgtcttcggtttcgcctcacagtcaaggt
tacaagtccctgccgtacccactaaagaaacagaacggaaagatcaagtacgagtgcaac
gtctgtttcaagaccttcggccagctgtccaacttaaaggtgcacttacgggtgcacaac
ggagagagaccgtttcagtgtccgctgtgcaagaagtgcttcacccagctggcacattta
cagaaacatcacctggtccacactggagagaaacctcatgagtgtgaggtgtgccagaag
cgttttagcagcaccagcaacctgaagacgcacctgcgcttacactcgggggagaagcct
taccagtgcaaagtctgtggcaccaagttcacgcaatacatccacctgaagctgcaccgc
cgcatgcacagctcgagcgagcgaccgcattgctgcccgttgtgtcaccgtggtttcctc
catcacttttccctcaggctgcaccgtcactcagggtgttgcaccgccaattcccagcct
gaaactagcgagctcaggtacgccgccgagatcctcgagaggtttgatgtcagcgccgag
gccgaagctctggcagagaatgcgtcggagaccgaagtcgatgccactttggagaggtgg
ctggagctggaagatcgacccaaacccgggcactttaaagcatctgactctgacctggtg
aagacctcagaaccagggaaatggcaggagagggccagcgtggtgcgcttcggtggcgaa
gccagagtgcaatga
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