Tachysurus fulvidraco (yellow catfish): 113649264
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Entry
113649264 CDS
T08119
Symbol
usp40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tfd01002
]
113649264 (usp40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfd04121
]
113649264 (usp40)
Enzymes [BR:
tfd01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
113649264 (usp40)
Peptidases and inhibitors [BR:
tfd01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
113649264 (usp40)
Ubiquitin system [BR:
tfd04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
113649264 (usp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
YukD
Motif
Other DBs
NCBI-GeneID:
113649264
NCBI-ProteinID:
XP_027012770
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All DBs
Position
5:complement(34231469..34245203)
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AA seq
1234 aa
AA seq
DB search
MSMFGDLFEEEEEESTTNTITQSKGKVCEPPRPRGKLKLSGIRNQGSTCYLNSLLQTLLH
TPEFREELFRLGPEELGKLEDKDKPDAKVRVIPLELQNLFARLLLLDEQTTTTTALTESF
GWTNNEEMAQQDVQELNRILFSALESSLIGTSGSSLIQRLYHGTLINRVTCNECLNVSER
QEDFLDLTVCVRGVSSLEEALWSMFVEEEVFEGNNLYRCSHCDQLVKATKSAKLRKLPPF
LTVSLLRFSFDFKKCERFKETRRYSFPLSINLRPYCEQSDQPDSELSYELYSVIIHKGGC
YGGHYHAYIKDIDQLGHWELPDAGSQEDVKQMKQKVQVKSVTVSVCESVEKDNPLSLLIS
VLAQEAGGSVLMDQLGQKLMEKIGCSWNKKYRKQHGPIRKFLQSNPEVFVLLANGSRVAL
RNPAETPEQGAEPKSVADCVQDLLEAGTDSGLEAEPVSRHWFDLNDSMVTAISESDIIKQ
YEGKESAYMLFYRKRTLHRDPHVVGNPAFGVPAHLLQMVQEENDKLQQRRAEFEISSNSI
DVRLHFASHYCAENGALKLMDTHTDTHTVTLSIDCRRTVGDLRLAVYQMQDAWKGDMALT
IAKNLPAGLHLYDTLTDDQQSLYSAGVYNRSDLFVWNGKEVNGVCIQTGAESEPLLLNIL
RPGGPELGLMTQASEPDACGLVHVTQGFSGRATLGGVRDALSLPEALVCQQAKGIGAGGE
GGGASRWKVCSPEAMRMTLRELTLQDGDTLLLLPHTPLNTSVFSVSEDVVTVMTPSDCRW
LQVEFHTAHEEEKKLMKIPAAGSTLLREVKQRALEEMQLQEHFSGGVCCLRERDRTGKFL
PPVCEDLSVRDAGIKLMTSLCLCPGYSPNTSQLFLIFCVGPPRGPEMEIIVEQTITVKEC
LMAMLQKAGLTGTCWHLRRMDWCEEVGEPLTDENASLLDMGVVNGDTLVITEGQLPPKGF
LRLPVSWFMDLSDECERNNTTESHSTELQSVGCVEISEEASLQELRCQVLTLPALVQVCV
PSPEFLRVWLVEKKKLIRILRGNQLTLRKLKLSVGSEVCVQKLQCVENLGLKDILLRLQV
DVAKDELGVSDERVCFPTHEFVWEAGIDSSPRGLYHAVSTHCGVSPENLLLAKHLPEQHT
WLTINYVIQALSKQKKKKQNKNNSKGVNLQGAPYCLRDGDTIAVKNLLIDSNREFGTVKN
EHTLREQREYSRCPGKRRNRKAEVALSINVGVFR
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcggagatctatttgaagaggaagaagaagagagcacaactaacaccatc
acccagagtaaagggaaggtatgtgagccgccacgtcctcgagggaagctgaagctgagc
ggaattagaaatcagggatcaacatgttacctcaactcactgctgcagactttgttacac
acacctgagtttagagaggagttgttcaggttaggacctgaggagcttggcaagctggag
gataaagacaaacccgatgctaaggtccgtgttattcctctggagttacagaatctgttt
gctcgattgttattgttggatgaacaaacaacgacaaccacagcactgacagagagcttt
ggctggaccaataatgaggagatggctcagcaggatgttcaggagttaaacaggattttg
ttcagcgcattagaatcatctctcattgggacgtcaggctccagtctgatacagagactt
taccatggaaccctgatcaacagagtcacctgtaacgaatgtctcaacgtcagtgagaga
caggaggactttctggaccttacagtgtgtgttcgtggtgtgagcagcctggaggaggca
ctgtggagcatgtttgtggaggaggaagtctttgagggaaataatctgtatcgctgcagc
cactgtgaccaacttgtcaaagctaccaagtctgctaaactgaggaagcttcccccattt
ctcactgtgtctctgctgcgcttcagttttgactttaagaagtgtgagaggtttaaagag
accagaaggtacagcttcccactcagcatcaacctgcggccgtattgtgagcagtcagac
cagccagactctgagctgtcctatgagctctactctgtcatcattcacaaaggtggatgt
tatggaggtcattaccatgcctacatcaaagacattgaccagcttggccactgggagctg
cctgatgctggttcacaggaggatgtaaaacagatgaagcagaaagtccaggtgaagtct
gtcactgtgagtgtgtgtgagtctgtggagaaggacaaccctctgtctctgctaatatct
gtactggcccaggaggcgggggggagtgtgctgatggatcagctgggtcagaagttaatg
gagaaaattggctgttcctggaataagaaatacaggaagcagcacggcccaataaggaag
tttctgcagtctaaccctgaagtgtttgtgttgctggcgaatggctcccgtgtggctctc
agaaacccagcagaaacacctgagcagggtgcagagccaaaatctgtggcagactgtgta
caagatttgttagaggcaggaacagactctggtttggaggcggagcctgtgagcagacac
tggtttgacctgaatgactcgatggtgacggccatcagcgagagtgacatcatcaaacag
tatgagggaaaagagagtgcatacatgctgttctacaggaaacgtacactgcacagagat
cctcatgtggtcggtaatcctgcgtttggagttcctgctcatttgctacagatggtgcag
gaggaaaatgacaagcttcagcagaggagggcagagtttgaaatcagcagtaacagtatt
gatgtccggcttcactttgcttctcattactgcgctgagaatggagcactaaagctaatg
gacacccacacggacacacacaccgtcaccctgagcatcgactgcaggaggactgtggga
gacctgagactggctgtttaccagatgcaggatgcgtggaaaggggacatggcactgact
atcgctaagaacctgcccgcaggactacacctgtatgacacgctgacagatgatcagcaa
tctttgtacagtgctggagtgtataatcgctccgatctgtttgtttggaatgggaaagag
gtaaatggtgtgtgtatacaaaccggagctgagtctgaaccgttgctgttgaacatcctg
agaccaggtgggccagagcttggcctcatgacccaggcctcagaaccagatgcttgtggt
ctagtgcatgtaacacaggggttttcaggcagagccacactgggtggagtgagggacgct
ctgagcctgccggaggctctggtgtgtcagcaggcaaaagggataggagcaggtggagag
ggaggtggggccagcaggtggaaggtgtgttcacctgaggccatgaggatgacactaaga
gaactcacactccaggatggagacacactgctgctgctgccacacacacccctgaacacc
agtgtcttcagcgtcagtgaagatgtagttactgtaatgacaccgtcagactgtcgctgg
ctgcaggtggagtttcacaccgcacatgaagaagagaagaagttgatgaagattcctgct
gcaggaagcacattgctgagggaggtgaaacagagggcactggaagagatgcagctgcag
gagcacttctcaggtggggtgtgttgtttgagagagagggacagaacagggaaattttta
cccccagtctgtgaagacctcagtgtgcgtgatgcaggcatcaagttgatgacatcactg
tgtctgtgtcctggatactccccaaatacctcacagctcttcctgatcttctgtgtgggg
ccacctagaggcccagagatggagataattgtggagcagacaataactgtgaaggagtgc
ttgatggcgatgctgcaaaaagctggactcactggaacatgctggcatttgagaaggatg
gattggtgtgaggaggttggggagcccctgacagatgaaaatgcttctttgttggacatg
ggagtagttaatggagacacacttgtgatcactgagggacaacttcctccaaagggattt
ctgaggttgcccgtgagctggtttatggacctgagtgatgagtgtgagagaaataacaca
acagaatcacactctacagagctgcagtctgtaggctgtgttgaaatctcagaagaggcc
tcactacaagaactcaggtgtcaggtgctgactttgcctgcactggtacaggtgtgtgtt
ccatctcctgaatttctacgtgtttggttggtggagaagaaaaaactgatcagaatcctc
aggggaaaccaactcacactcaggaagttgaagttgtctgtgggatctgaggtttgtgtg
cagaaactgcagtgtgtggagaaccttgggctaaaggacatcctgctgcgtctgcaggta
gatgttgccaaagatgagttgggcgtgtctgatgagcgtgtttgttttcccactcatgag
tttgtgtgggaggcaggaatagattcttcccctagggggctgtaccatgcagtctccacc
cactgtggagtctcacctgagaacctgctacttgctaaacacctgcctgaacagcacact
tggcttactatcaactacgtgattcaggcattgtccaaacagaagaagaagaaacagaat
aagaataacagtaaaggtgttaacctgcagggggcaccatactgcttgagagatggagac
actatagcagtgaagaatctactgattgacagtaatcgggagttcggtacagtgaaaaat
gagcacacactaagagagcaaagagaatacagtaggtgcccagggaaaagaaggaacaga
aaagcagaagtagccttgtcaatcaacgtgggtgtgttcagatag
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integrated database retrieval system
