KEGG   Tachysurus fulvidraco (yellow catfish): 113649721
Entry
113649721         CDS       T08119                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030  DNA replication
tfd03410  Base excision repair
tfd03420  Nucleotide excision repair
tfd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113649721 (rfc2)
   03410 Base excision repair
    113649721 (rfc2)
   03420 Nucleotide excision repair
    113649721 (rfc2)
   03430 Mismatch repair
    113649721 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113649721 (rfc2)
   03036 Chromosome and associated proteins [BR:tfd03036]
    113649721 (rfc2)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113649721 (rfc2)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    113649721 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    113649721 (rfc2)
Chromosome and associated proteins [BR:tfd03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    113649721 (rfc2)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     113649721 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    113649721 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 AAA_22 nSTAND_NTPase5 RCF1-5-like_lid AAA_14 Mg_chelatase AAA_16 AAA_11 Viral_helicase1 Rad17 RuvB_N AAA_assoc_2 AAA_24 MipZ AAA_19 nSTAND3 AAA_18 ABC_tran AAA_28 AAA_5 DNAX_ATPase_lid AAA_25 SLFN-g3_helicase MeaB AAA_30 AMP-binding_C_3 AAA_23 RNA_helicase MCM NTPase_1 DUF815 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 113649721
NCBI-ProteinID: XP_027013451
LinkDB
Position
21:7349515..7355259
AA seq 353 aa
MEVEMKEADGEQSQSDAQSNKKGDATKSSTTTYELPWVEKYRPLKLNEIVGNEETVSRLE
VFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKARHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQALNNLQSTHS
GFGFINSENVFKVCDEPHPLLVKNMLEHCVTGNIDEAYKIISQLWSLGYSPEDIIGNIFR
VCKTLQMPEYLKLEFIKEIGYTHMKITEGVNSLLQLAGLLGRLCSKTAAPEAS
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggaagtggagatgaaagaagctgatggcgaacaaagtcagtcagacgcacagagtaat
aaaaaaggagatgcaaccaagtcttcaacgaccacatacgaactcccctgggtggaaaaa
tacagaccgctgaagctgaacgaaatagttgggaatgaagaaactgtcagcagactggag
gtgtttgccagagagggaaatgtacccaacatcattattgccggtcctcctggcactgga
aaaacaacaagcattttgtgtttggccagagctcttctaggcccggcgatgaaggacgct
gtgctcgagctaaatgcttcaaatgatcgaggtattgatgttgtccgaaacaagatcaag
atgtttgctcagcaaaaagttactctccccaaagcacgtcacaaaatcatcatcctggat
gaagccgacagcatgactgatggagcacagcaagctctgaggagaacaatggagatctat
tcaaaaaccaccagatttgctttagcctgcaatgcatcagataaaattatagagccaatt
cagtcacgttgtgcagtgctgcgctacagtaagctgagggacgaacagatcatgatgcgg
ctgatggaggtggtagagaaggagaacctgcacaccaccaacgatggactggaggccatt
atcttcaccgcccaaggagacatgagacaggcactaaacaacctgcagtccacacattct
ggatttggttttatcaacagtgaaaatgtgtttaaggtatgtgatgaaccacacccccta
ctggttaaaaacatgcttgaacactgtgtcaccggcaacatcgatgaggcttacaagata
atatcacagctttggtcactcggctactctcctgaagatataatagggaacatcttcaga
gtgtgtaagacgttacaaatgccggagtacctgaaactggagtttatcaaggagattggc
tatacccacatgaagataacagaaggagtgaactctctgctccagcttgctggactgtta
ggacgtctctgcagtaagactgcagcccccgaggccagctaa

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