Tachysurus fulvidraco (yellow catfish): 113649763
Help
Entry
113649763 CDS
T08119
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113649763 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113649763 (smg5)
03032 DNA replication proteins [BR:
tfd03032
]
113649763 (smg5)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113649763 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
113649763 (smg5)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
113649763 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
113649763
NCBI-ProteinID:
XP_027013511
LinkDB
All DBs
Position
25:1605828..1620317
Genome browser
AA seq
1089 aa
AA seq
DB search
MSGPGQDNEPEAKILHIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIARKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVESEQLAERFYHQALSVSPTIGMPFNQLGTLAGSKFYNVEATYYYLRCNQSET
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
VMETELTSLCQSVLEDFNLVLFYQPTPSHGSQSISEEEDEHDQAFSVLPDSLVFKMVVIC
LMVVHSLKRGGSKQYSTSIAFTLALFSHLVNHVNMRLQSELEQGESDVAPLRTDASDDAD
PREQTNTLPPEDKLLQNGSVEEDGDDENDEDELKGNGTAVSKKGSGKKSGEEKPKQKRKY
SRLSMLRRRRCARDEDESDLSEGFESDEEEDEEPQRADGSGVPTNSSLGKEGDTAGEQGV
WESGSEEEEEEEEEEEGGTAFDVETDSDMNSQESRSDLEDMEDAASPVQEQQLVEEEEEE
TAHPSREEGSTPPATNGPLLSNDPSISSNLQAVSSQLFQAKRCFRLAPTFSNVLLRPSHA
SITASESVPSQEATPPPGDTPSNTTPEIANGTNEDDVDMEDSEHSNQSYHSEKTLSERLE
ILTNQGLIQVVKVFVDWMRTNTDIILMCAQSSQSLWNRLSVLLNLLPDGNKVLEADLFLK
KEVRDLLANSEQPDLVQSVLLPEDQALRHLPALNLAHRRLDFTHHRTSLSQLQECVVRLC
CIRSFGHFLTGLQGNVLHYNPEAGIFTSISQSEQENMVQQAKAQFRMAEEEARRNRLMRD
MAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTGALCQHLNLLRQLAASGCFIIIIPRT
VIDGLDVLKKENPGARDGIRFLESEFRKGNRYIRCQKESGRSFERDKLKRQDIEAWHLYK
MVDSCRQLTGSQGGGDEDTAGMVTLLTAYAVEELADRSAPMKSAIQAAVSAGMELKNIVE
FYRQWKEMG
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggacaagataacgagcctgaggccaaaatcctccacatcaagcggctg
tacagggccgtggtggaatccgtacacaagctggacgtgatcatcggcagcaagtcgtcc
tacagggaggtcttcaaaccggagaacatcagcctaaggaacaaactgcgtgagctgtgt
gtaaagctgatgttcttgcaccctgtggattacggacgcaaggcagaggagttgctctgg
aggaaggtttactacgaggttattcaagtcatcaagaccaacaagaagcacatacacagc
cgtagcgctctggagtgcgcatacaggacgcacctgatcgctggcgtcggcttctaccag
cacctcctgctctacatccagtcccactaccagttggagctgcaagactgcatcgactgg
acgcacgtcaccgacccactcattgctcgtaagaagccggtgtctgccacacctaaggag
atggaatgggctcagatggcatgtcatcggtgtcttgtgtatctgggtgacctcgcaagg
tatcagaacgagctggcaggcgtggagtccgagcagctggccgagagattttaccaccag
gccctgtctgtctcgccaaccattggaatgccttttaatcagctcggtactctggctgga
agtaaattctataatgtagaagctacctactattacctgcgctgcaatcagtccgagacg
cccttcgagggagcctacggaaacctgaagcgtctgttcgataaagcggccaagatgtac
catcaggtgaagaaacaggagatgaagaagctttcaccatcacgccagagatcaaaggac
atcaagcgactccttgtaagcttcatgtacctccagagtttactgcagcccaagaacagc
gtgatggaaacggagctgacgtcgctgtgccagtcggtcctggaggactttaacctggtg
ctgttctaccagcccacaccgagtcacggcagccagtccatcagcgaggaggaagacgag
cacgatcaggccttcagcgtgctgcccgacagcctggtgtttaaaatggtggtgatctgc
cttatggtggtacacagcttaaagcgaggaggttctaaacagtacagcacgtccatcgcc
ttcacactagcacttttctcccatctggtgaaccacgtgaacatgagacttcaatccgag
ctcgaacaaggagagagcgacgtcgcgccgttacgcacagacgcctcggatgacgctgat
cctcgagagcagaccaacacacttcccccggaggacaaactgctgcagaacggttccgta
gaagaagacggagacgacgagaacgacgaagacgagctgaaaggcaacgggacggcggtt
tctaagaaaggctctgggaagaagagtggcgaggagaagccgaaacagaagaggaaatac
tcacgtctgtccatgctgcggcgacgacgctgcgctcgcgacgaggacgagagcgacctg
agcgaaggcttcgagagtgacgaagaggaggacgaagagcctcagagagcagacggctcg
ggagtcccgacaaactcctctctggggaaagaaggagacacggcgggagagcagggggtc
tgggagagtggatcggaggaagaagaggaggaagaggaggaggaggagggtggcaccgcg
tttgatgttgagacagactctgatatgaacagccaggagtcgcgctctgatctggaggac
atggaggatgcagcgagtccggtgcaagagcagcaacttgtggaggaggaagaggaggag
acagcgcatccatcacgggaggaaggctccacaccaccggccaccaacggcccgctgctg
tccaacgatcccagtatcagcagcaaccttcaggccgtgtcgtctcagctcttccaagcc
aaacgctgcttccgtctggctccgaccttcagcaacgttctgctgaggccctcacacgcc
tccatcacagcctccgaatccgtcccctcacaggaagccacaccccctcccggggacaca
cccagtaacacaactccagagatcgccaacggaaccaacgaagatgatgttgacatggag
gacagcgagcacagcaaccaatcatatcacagcgagaaaaccctgtcagagagactggag
attctgaccaaccaaggcctcattcaggtggtgaaggtctttgtggattggatgaggaca
aacacggacatcatcctcatgtgcgcacagagttctcagagtttgtggaaccgcctttca
gtgctgcttaacctactgcctgatgggaacaaggtgctagaagcagatctcttcctgaag
aaggaggtgagggacctgctggccaatagcgagcagccggacctggtgcagtctgtgctg
ctgccggaggaccaggcgctacgccacctccctgccctgaacctggcacaccgccgcctc
gacttcactcaccacagaaccagtctgagccaactgcaggagtgtgtggtgcgtttgtgc
tgcatccgcagcttcggccacttcctcaccggtctccaaggcaacgtgctgcactacaac
ccggaggcaggtattttcaccagcatcagccaatcggagcaggaaaacatggttcagcag
gcgaaggcgcagtttcgcatggctgaagaggaagcgcgcaggaacaggctcatgagggac
atggcacaactacgcctgcagttagaggtgtcccagctggagggaagtcttcagcagccc
aaagcccagtcgtccatgtctccgtacctggtgcctgacaccggagctctgtgccagcac
ctgaacctgctgcgacagctggcagcaagcggctgcttcatcatcatcatcccgcgcaca
gtcatcgatggactcgacgtcctaaagaaggaaaatcccggcgcgagggacggcatccga
tttttggagtccgagtttagaaaagggaacagatatatccggtgtcagaaagagtctggg
aggagttttgagagggacaagctgaaaagacaggacattgaagcctggcatctttataaa
atggtggacagctgtcggcagttgacgggctctcagggcggaggagacgaggacacggcc
ggcatggtgaccctcctgacggcgtacgcggtggaggagctcgctgaccgctctgccccc
atgaagtcggccatccaggcggcggtgtcggcaggaatggagctgaagaacatcgtggag
ttttaccgtcagtggaaggaaatgggctga
DBGET
integrated database retrieval system
