Tachysurus fulvidraco (yellow catfish): 113650210
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Entry
113650210 CDS
T08119
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113650210 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113650210 (smfn)
03009 Ribosome biogenesis [BR:
tfd03009
]
113650210 (smfn)
Messenger RNA biogenesis [BR:
tfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
113650210 (smfn)
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
Pre-60S particles
RNases
113650210 (smfn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
113650210
NCBI-ProteinID:
XP_047661206
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Position
20:complement(2042675..2045827)
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AA seq
273 aa
AA seq
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MAALRVLCASCSRRVAVRVVPRVAVGLFLRTKLQQTDLTLQSYIHHHKARVLSSNLHLNP
VLMSASVSTSTSAAMMSHRMVWVDLEMTGLDIEKDEIIEMACIITDSDLNIIAEGPNLII
NQPDELLDSMSDWCKEHHGKSGLTQAVRDSKISLQQAEYEFISFVRQHTPPGQCPLAGNS
VHADKRFLDKYMPQFMHHLHYRIIDVSTVKELCRRWFPDDYKHAPQKKSSHRALGDIQES
IKELKFYRETVFKPQGEEKKRKIVENGENKHTA
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggctgcactgagggtgttgtgtgcatcgtgttcacgccgggttgctgttcgtgttgtt
cctcgcgtggctgtgggtttgtttctcaggactaaactccagcaaacagatttaactctg
caatcatacatccatcatcacaaagccagagttttatcctcgaacctccacctgaaccca
gtgttaatgtcagcttctgtttccacatcaacatctgctgctatgatgagccacaggatg
gtgtgggtggatttagagatgacaggactggatatagaaaaggatgagattatcgaaatg
gcatgcatcatcacagactcagatctcaacatcatcgctgagggtcctaatctgatcatc
aatcagccggacgagctgctcgacagcatgtcggattggtgcaaggagcatcacgggaag
tcagggttgacgcaggcagtgcgggacagtaagatctcactccagcaggcagagtatgag
ttcatatcattcgtcagacagcacacaccaccgggccagtgtcctctggcaggaaactct
gtgcacgctgataagaggtttttggacaagtacatgccccagttcatgcatcatctccac
tatcgcatcatcgacgtgagcacggtcaaggagctttgcagacgctggtttccagacgac
tacaaacatgcacctcaaaagaaatcttcacacagagcgctgggtgacattcaagagagc
atcaaagagctgaagttttacagagagaccgtcttcaaaccccaaggagaagagaagaag
agaaagattgttgaaaatggagagaacaaacacacggcctaa
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