Tachysurus fulvidraco (yellow catfish): 113651114
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Entry
113651114 CDS
T08119
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04140
Autophagy - animal
tfd04148
Efferocytosis
tfd05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113651114 (vps16)
04148 Efferocytosis
113651114 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
113651114 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tfd04131
]
113651114 (vps16)
Membrane trafficking [BR:
tfd04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
113651114 (vps16)
Hops complex
113651114 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
Motif
Other DBs
NCBI-GeneID:
113651114
NCBI-ProteinID:
XP_027015573
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All DBs
Position
5:30906797..30915890
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AA seq
835 aa
AA seq
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MAFVTANWNPLGENFYRKIELYEMGWNLKDGLRDCLIAAAPYGGPIALLREPQRRSPNAR
PQLEIYSASGGTLGSFPWKSGVVKQLGWTVCDDLLCVQEDGTVLVYDLFGSFKRHFSMGN
EVGQSQVVEAKIFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQGAPSCWAVL
TQDRQCKVLVANGAEIFILDYGTCTAVSPPGLSPQATSIVHMCVSFSYKYLALFTDSGHV
WMGSSSLREKLSEVEIKVRNPPRQMAWCRRPKSQQPSVVIMWDRYLLVVGVCKDTIPYHL
DDDSVLVPELDGVRIVNGTNHELLQEVPAACEEIFKIASMAPGALLLEAHKEYEKESQKA
DEYLREIKEQDLLSEAVRQCVEAAGHEHEPETQKTLLRAASFGKCFLSNFPAEPFVSMCR
DLRVLNAVRDYTVGIPLTHTQFKQMTVQVLTDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEEADEVIARTVSLKLGDAAGISYSEIANKAYECGRTELAIKLLEFEP
RSGEQVPLLLRMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQETLKDLFNQDDDHQELGNFYVKASYKEKRLEARMSLLQSAVDEYNKAKNE
FAAKATEEEMRLLRFQRKLEEEKGECVTGFSLHDTLSTLLALGLHKQAEQLYKDFRVPDK
RYWWLKLTALADKADWDELEKFAKSKKSPIGYMPFVEVCVKRNNKFEAKKYVLKVTPEQK
VKAYLAVGDLEGAADAAIERRNEGEISTVLSHCSPATDRTLVERLNRAKATATKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgtcacggctaactggaatcctcttggagagaatttttacaggaagattgag
ctgtatgagatgggctggaacctgaaggatggtctcagagattgtttaatagctgcagct
ccatacggtgggccgatcgctcttctgagggagcctcagcgccgctctcccaacgctcga
ccccagttagagatctattctgcttccggagggactcttggcagctttccgtggaagagc
ggtgtggtgaaacaactgggctggacggtgtgcgacgatctcctgtgcgtccaggaagac
ggcactgttcttgtctatgacctctttggcagttttaagagacacttcagcatgggcaac
gaggtgggacagagccaggttgtggaggcaaagatcttccattcaccatatgggactgga
gttgccatagtaacaggagcatcccggtttaccctggcaacaaacattgatgacctgaag
ctgaggaggttacccgaggtaccaggtctccagggggctccatcctgttgggcagtgctt
acccaggacagacagtgtaaagtgttggtggcaaacggtgctgagatttttattctggat
tacggcacttgcactgcagtgagccctccaggtctctctcctcaggctaccagtatagta
cacatgtgtgtgtcattcagctataagtacctggccctgttcactgactcaggccacgtg
tggatgggctccagcagcctgagggaaaaactcagcgaagtagagattaaagtcagaaat
ccacccagacagatggcctggtgtcgcaggccgaaaagtcagcagccctcggtggtgatc
atgtgggatcggtacctgctggtcgtaggagtgtgtaaagacaccatcccgtaccacctc
gatgacgactcggttctggtcccagagctggacggcgttcgaattgtcaacggcacaaat
catgaactgttgcaggaagtcccagctgcctgtgaggaaatctttaagatcgcttccatg
gctcctggagctctgctgctggaagctcacaaagaatacgagaaagagagccagaaggca
gacgagtatctgagggagattaaggagcaggatctattgagtgaggcggtgaggcagtgt
gtggaggcggcaggacacgagcatgagccagagacgcagaaaacactcctgcgggcggcc
tccttcggaaaatgctttctcagtaactttcccgccgagccgttcgtcagcatgtgtcga
gacctccgagtgttaaatgcagtgagagattacaccgtgggcatccctctcacacacacc
cagttcaaacagatgaccgttcaagtgctcacagaccgactagtatatcgcaagctgtat
cctctggccatcgagatctgtcgctatctgaaaactccagagtatcagggtgtgagtcga
gtgctcaaacactgggcctgctgcaaggtgcagcagaaggaggaggctgatgaggtcatt
gcgaggactgttagtttaaagctgggcgatgcagctggaatctcctactccgagatcgct
aataaagcctacgagtgcggacgcaccgaactcgctataaagctgttggagtttgagcct
cgctctggtgagcaagttcctctgctgctgaggatgaagaggagccagttagcacttagc
aaagctatagagagtggagacacggacctcgtgtacacggtggtaacgtacctgaagaac
gagatgaacagaggagacttcttcatgactctgaggaaccagccagtggccctgagcctc
tacagacagttctgtaagcatcaggaacaggaaacgcttaaggatctctttaaccaagat
gacgatcaccaggaactgggaaatttctatgtgaaagctagttacaaagagaagaggctg
gaggctcgaatgtctttattacaaagtgcagtagatgagtacaacaaggccaagaatgaa
tttgctgccaaggctacagaggaggagatgcgtctgctgcgtttccagaggaagctggaa
gaggagaagggcgaatgtgtgacgggtttctctctgcacgacactctgagcacgttgctc
gctctgggtctgcacaagcaagccgagcaactctacaaggacttcagggtgcctgataag
aggtattggtggctgaagctgacagcactggctgataaagcagactgggacgagctcgag
aaatttgccaaaagcaagaaatcacccatcggctacatgccctttgttgaagtgtgcgtg
aaacgaaacaacaagttcgaggccaagaaatatgtgttgaaagtcacaccggagcaaaag
gtcaaagcctatctggcagtaggcgatttggaaggggcagcagatgcagctattgagcgg
aggaacgagggagagatcagcactgtcctgtctcactgttcgcctgccacagaccgcacg
ttggtagagcgtctaaaccgtgccaaggccaccgccaccaaaaagtga
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