Tachysurus fulvidraco (yellow catfish): 113651642
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Entry
113651642 CDS
T08119
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113651642 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113651642 (smarcc2)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113651642 (smarcc2)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113651642 (smarcc2)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113651642 (smarcc2)
PBAF complex
113651642 (smarcc2)
GBAF(ncBAF) complex
113651642 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
113651642
NCBI-ProteinID:
XP_027016280
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All DBs
Position
5:complement(594881..620088)
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AA seq
1031 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKSFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFLTIEKSLVQNNCLTRPVIYLSSEIEPKLLGKMKDIIKRHQGSVTDDKQASSHLVVP
IPASLEEEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAVVEDPPSAEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGTRRKRISAKTLTDEVSAPDERRDKKPANAKKRKRSPSP
SPTPPPQESKKKNTKKGPTTPYNKSKRGQREEEQEDLNKDLDELSPVPASEESLNKTVTK
KDSDSTPVKGGTDGDEQEDEAMETVGKEEDEGSASVKGEPVKGSDLHEDNVTEQTHHIII
PSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTAC
RRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVPLQP
KSSQTPSSQPMMSFPDKVKDKPTDLQNFGLRTDMYSKKSGPSKSKNAASATREWTEQETL
LLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEEGPTSLGPLAYQPVPFS
QAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAARVSG
RPDPLYGLEGSGIAGTGLEDADKPAEESSDESKNSDAQNTEDKRDNKDGKDGANEEEEKQ
GENGKKEEEGSKEVETEREAEKTDSDTGDVEKEKEGKEGSEDGQREGESDVERKAKVERD
VGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETI
MDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQPGNAPP
IPHQTTPNANAPPPAPSLAPAVSASNPSEAPPTSASHGSSPNNTQPGAVHDSSTALTGDS
LHPSGPVTPAQ
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcgggccgaatgtgaaatatttcgaagcctctgatacc
gtgtctcagttcgacaatgtccgcgtgtggctggggaagaattataaaaagtatatccag
gcggagcctcccactaataaatctctgtccagtttggtggttcaactgctgcagtttcag
gaggaagtttttggtcgacatgtcagcaaccctcctctcaccaaactaccgatgaagagt
tttttggactttaaggcaggaggagcgctgtgtcacatactcgctgctgcttacaagttc
aagagtgaccaaggatggaggaggtttgatttccagaatccttctagaatggaccggaat
gttgagatgtttttgaccatagagaagtctctggtacagaataactgtctgactcggcct
gtgatctacctgagctcagagatcgaacccaaacttctgggaaaaatgaaggatattatt
aaacgacatcagggctcagtaactgatgataaacaggctagttctcatctggtggttccg
atccccgccagtctggaagaggaggagtgggtccgtcctgtaatgaagagagataaacag
atgctgctgcactggggttattggcccgacagttatgatacatggatctcagctagtgag
gtggaggccgtagtggaggatccacccagtgcagagaagcccagaaaggttcatgctaag
tggattttggatctggatcagtataatgagtggatgaatgaggaagactatgaggtgggt
gaaggcacaaggaggaagaggatctcagctaagactctcacagatgaagtgagcgctcct
gatgagaggagagataaaaagccggccaacgccaagaaacgcaagcgctctccttcgcca
tccccaactccgccccctcaggagagcaagaagaagaacaccaagaaagggcccactact
ccctacaataagtcgaagcgaggtcagagggaggaggagcaggaggatttgaataaagac
ctggatgagctgtcacctgtacctgcatcagaggagtcactcaataaaacagtgactaaa
aaggactcggactcaactccagttaagggagggactgatggagatgaacaggaggatgag
gcaatggagacggtgggaaaggaggaggatgaaggttctgccagtgtgaagggagaacca
gtgaaaggttcagatctacatgaggataacgtaacagaacaaacacaccacatcatcatt
cccagctacgctgcctggttcgactacaacagtgttcacgctatcgagcgcagagctcta
cctgagtttttcaatggaaagaacaaatctaagacccctgagatttatctggcttacagg
aactttatgatagatacgtatcggctgaacccacaggagtatctgacctctactgcatgt
cgtaggaacctggcaggagatgtttgtgccatcatgagggtccatgcatttctggagcag
tggggtttgattaattatcaggtggactctgagagccgtcccacccccatgggaccgccg
cctacatcccactttcacgtcctggcagatacgccgtccagtctcgtgcccctgcagccc
aaatcctctcagactccgtcctcacagcccatgatgtcattcccagacaaagtgaaggac
aaaccgacagatctgcagaactttgggctgaggacggacatgtacagtaagaagagcggc
ccatctaagagtaaaaacgctgcaagtgccacacgagagtggactgaacaggaaactctg
ctgctgcttgagggtctggagatgtacaaggacgactggaacaaggtgtcagagcacgtg
ggaagccgtacacaggacgagtgtatcctgcacttcctgcgcctgccgatcgaggacccg
tacctggaggaagggcccacgtctctggggccactggcgtatcagccggttccgttcagc
caggcagggaacccggttatgagcaccgtggctttcctggcttcagtggtcgacccacgc
gtggcctcagctgcagccaagtctgccctggaggagttttcccggatgaaggaggaggtt
ccagcagctctggtggaggctcatgtacggcgtgtggaggaagcagccagagtaagtggc
agaccagatcctctgtacggcctggagggaagtggcatcgctgggacgggcctggaagat
gcagataagcctgcagaggaaagtagtgacgagagcaagaacagtgatgctcaaaacaca
gaggacaaaagagacaacaaggacggtaaagatggagcaaatgaagaagaggagaaacag
ggtgagaatgggaagaaagaagaagaaggcagtaaagaggtagaaacagagcgtgaggca
gagaagactgactcagacacaggtgatgtagagaaggagaaagaaggaaaagaaggatca
gaggatggacagagggaaggagagagtgatgtagagaggaaagcaaaggtggagagagat
gttggtgaggggaatctggccacagctgctgcctctgcactcgctgctgctgcagttaaa
gccaagcacctggcagcagtagaggaaaggaagatcaagtctctagtggctctactggtg
gagactcagatgaagaagctggagatcaaactgaggcactttgaggagctggagaccatc
atggatcgggagagagaggcgttggagtatcagaggcagcagctcctggctgatcgtcag
gcgttccacatggagcagttgaagtatgcagagatgagagctcgccagcagcacttccag
cagatacaacaccagcaccatagcaaccaacccggcaaccagcctggcaatgcaccgccc
atcccccaccaaacgacacctaacgctaatgccccgcctcctgcacccagccttgcccca
gctgtctctgccagcaaccccagtgaagccccacccacctctgcctctcatggctcctcc
cccaataacacacagcctggagcagtgcacgactccagcaccgcactaacaggagactcg
ctccatccctccggccccgtgacccctgcacagtga
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integrated database retrieval system
