Tachysurus fulvidraco (yellow catfish): 113652284
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Entry
113652284 CDS
T08119
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113652284 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113652284 (edc4)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113652284 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
113652284 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EDC4L
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
113652284
NCBI-ProteinID:
XP_027017026
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All DBs
Position
13:15061007..15088950
Genome browser
AA seq
1406 aa
AA seq
DB search
MCEHKTKQAVICHFATFRPLSDLMASSSNIDIEGATQHLRDILKLDRPTNSTENTAGESQ
RKTSCNGELNGLLGTDLIGAGVLSAVMDPSTHSSDNINMADTQTISLTGDDCSTCIPITA
SNVVIVASQDSSIDSKARGSNKVKIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGASNQ
YMIRVLRLGSTERTLLKGFTGAVTDLAFAHLDSTLLGCVDEAGNMFIWQLTSQNSKIQDE
VIVHIRRPDDTPLNSSRRLIWCPFIPEDNEENPEDCCQTIALLHEDRAEVWDLDILRSSN
TTWPVDATEIKEGFIAIKGHTARISEGALSPDGTVLATASHDGYVKFWQIYIEGLDQPRC
LHEWQPHNGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIKF
NPDPVNSSVLPSLKASLDLSAECLILTDVQRKVLYVMELLQDQEKGHASFMAVSEFLLTH
PVLSFGVQDVSHARLRHTEVLPPDEESESMTTEGSQGPLESKSGIQIKLYCVHTKSLQDV
QIWFQPNQGAAAASLFLPTCSGPPDGFGFADPLTDLSMEMLSSDKESGASDSQTDLCKIP
SLPAPADFLSPSGSTMPKLMTPDAFMTPSASVPASPGSSASSLTIVTAMSSSDSGPRAAE
DLTQSPKLCTDAASSSLNLSASTSSPRANSILISGLGENIQVMPSPNPSMSLDLQAMEPV
LLPQASPTRTRSPDVISSASTAMSQDIIPEIASETLPRGMAEARDPLQGLQDSMASAASA
LHLLSPLELSGGASGDTEQRLSSTPSLLETALSQENAVNAVASSCSESGASRSWPAAPDI
TRETRNSLRDNGLGECSREDLKDLHMSSPFHRRTYHLTQNDSQDASAEQSDHDDEVASLA
SSSGNCGSRASHRLPVKDWKSSPRGSPKLKRKSKKDEGDSSQSRHLDNQMSVEVQDELLL
LLRSQQRELDELRQSQQELLQRLTGHMDAVQSSIMAHVEHVLLTQQEQGQRTMERVLAEG
HAHNQQLQEHLTQQLAHTLGTTVSNRLDKVLREEMKKTVPQTVTKSLEPLTGQMSNIISA
KLTSVEATLKENVTKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQS
MFQQINDSFKQGTNEYIQQLETHVKNRKQREQDARDPVIGQLQQMIDSLQTSQDQLATTV
AASVRTEVQHQLHLIVGNLQDSILSQVQRIVKGEVSQAMKEQQAVVTSSIMQAMRSAAST
PVPTAHLDFQAQQASILQLLQQGQLNEAFQQALSAADLNLVLYVCETVDSQQVFGQTPCP
LHQAVLLSLIQQLSTNLVTRTDLKISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLFQF
LQQDPHSSLSKRARRLLMMLQGLVNH
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgagcacaagacaaaacaagcggtaatttgtcacttcgcaacgtttcggcccctt
tcagaccttatggcttccagttccaacatagatatagaaggggcgactcagcacctgaga
gatatcttaaaactggatcgacccactaactccaccgagaacactgcaggtgagagccag
cggaagacctcgtgtaatggagagctaaacggcctgctggggactgaccttattggagca
ggagttctaagcgctgtgatggatccatcaactcacagctctgacaacataaacatggca
gatactcagacaatttccctgactggagacgactgctctacctgtattcccatcacagca
agcaatgtagtaattgttgccagccaagactccagtattgacagtaaagctcgtgggagt
aataaggttaaaatccagccagtggcaaaatatgactgggaacacaaatactactatggc
aacctaatagcagtgtctaatgcgtacttggcgtatgccattcgaggtgccagtaatcag
tatatgatccgggtcctgcgattgggctcgacggagcgcacactgcttaagggtttcacc
ggagctgtcacagacctggccttcgcccatcttgactccaccctgttgggttgcgtggat
gaagccggcaacatgttcatctggcagctcaccagccaaaacagcaaaatccaagatgaa
gtgattgtgcacattcggagacctgatgacacaccgctgaactcaagccgtagactcatc
tggtgccccttcattcctgaggacaatgaggagaacccagaggactgctgccagacaata
gcattgctgcatgaagatagagctgaggtttgggaccttgacatcctacgctctagcaac
accacatggcctgtggatgctacagagattaaagagggcttcatcgccattaaaggacac
acagcgcgtatcagtgagggagctctgtctccagacggcaccgttctcgccacagccagt
cacgacggctatgtcaaattctggcagatttacattgaagggctggaccagccaagatgt
cttcatgagtggcagccacataacggaaggcctctctcctgcctgctcttctgtgacaac
cataagaagcaggacccagaagttccgttctggagattcttaatcacgggagcagatcag
aaccaggaactgaagatgtggtgcacggtatcatggacctgtctacagactattaagttt
aaccctgacccagttaactcgagtgttctgcccagtctgaaagccagtctggacctatct
gctgagtgccttatcctaacagatgtgcagaggaaggttctgtatgtgatggagctactt
caagatcaggaaaagggccatgcaagctttatggctgtctcagagttcttactcacacac
cctgtgctaagttttggtgtccaggatgtcagtcatgctcgcttgcgccacaccgaagtc
ctccctccagatgaggagagtgaaagcatgaccacagagggaagccagggacctttggag
tcaaaatcaggaatccagatcaagctttactgtgtgcatacaaaatcccttcaggatgtg
cagatctggttccaacccaatcagggtgctgctgctgcctccctgtttttgcctacgtgt
tctggccctccggacggctttggctttgcagaccctctgactgatttgagcatggagatg
ttgagctcagataaggaatctggtgcaagtgattcacagaccgacctgtgtaagatcccc
tctctcccggctccagctgacttcttgagcccctccggctcgaccatgcccaaactcatg
accccggatgccttcatgacacccagtgcatctgtcccagcctcccctggcagcagtgct
agcagtttgactatagtaacagccatgagcagctctgacagcggtccaagggctgcagag
gacctcacccagagccctaagctgtgtacagatgcagccagtagcagcttaaacctcagt
gccagcactagcagcccaagagccaattctattctcatttcaggcctgggagagaacatc
caggtgatgccctctccaaacccctccatgtctttggatctccaggccatggaacctgtg
ctgctgccacaggcatcgcccactagaactcgttctcctgatgtaatctcttcagcctcc
acggccatgtcgcaggacatcatccctgagattgcctccgagacgttgccaagggggatg
gctgaggcgcgcgaccccctccaggggctgcaggacagcatggcatcagcagcctcagcg
ctgcacctgctttcacctctggaactaagcggaggagcatctggagatactgagcaaagg
ctcagcagcacaccctcattgctggagaccgcactgtcacaggaaaatgctgtcaatgct
gttgcatcgtcctgctctgaaagtggtgccagccgcagttggcctgcagcaccggatata
acacgtgaaacaaggaacagcctgcgagataacggcctgggagaatgctctagagaggac
ttgaaggacttgcacatgtcatcccccttccacagacgcacctaccacctaacacagaat
gacagccaggatgccagtgcagagcagagtgatcatgatgatgaggtggcaagtctggca
tcatcttcagggaactgtggttctcgagcctctcacagactgccagtgaaggactggaag
tcctcacctcgtggctcgcccaaactcaagcgcaagagcaagaaagatgagggtgattcc
tcacagtccaggcatttggataatcagatgagcgtagaggtacaggacgagctgctgttg
ctacttaggagccaacagagggagctggatgagctgcggcagagccagcaggagctgttg
cagaggctcacgggccacatggatgctgtccagagctccataatggcccacgtagagcat
gtcctgctcacccagcaggaacagggacaaagaacaatggagcgggtgttggcagaagga
cacgcacataatcagcagctccaggaacacctcacgcagcagctagctcacactttgggc
accactgtctcaaatcgcctagacaaagtgttgcgtgaagagatgaagaaaacagttcct
cagaccgtaaccaagagtctggaacccttgaccggacagatgagtaacattatttcagcc
aagcttacttcagtggaggccacgctaaaggagaatgtcaccaaagttgttaagtctaag
aacactactgacgccattggtcgagctgcagctgaagccatgcagggtcccatccaggca
gcctacaaagatgccttccaaagcattgtgctccctgtgtttgagcgtggctgccagtcc
atgtttcagcagattaatgacagctttaaacaaggaaccaacgagtacattcagcagctg
gagacacatgtcaagaacaggaagcagcgtgagcaagatgctcgagaccctgtaattggt
cagctgcagcagatgattgattcattacagacttcccaagaccagctggccaccacagta
gcagcaagtgtgcgcactgaggttcaacaccaactccacctgattgtgggaaatctgcag
gattcgatcctgagccaggtacagcgcattgtaaagggtgaggtgagccaggctatgaag
gagcagcaggcagtagtcacatccagcatcatgcaggccatgcgctctgcggccagcacg
cctgtccccactgcccacctcgatttccaggcacagcaggccagcatcctgcagctgctg
caacagggccagcttaacgaggctttccagcaggccttgtctgcagccgatctgaacctg
gtactgtatgtgtgtgagaccgtcgactctcagcaggtgtttggtcagactccctgcccc
ctgcaccaggccgtactgctctcactcatccagcagctctccactaacctggttacacgc
accgacctcaagatcagctatctggaggatgcagtgatgaacctagatcatggcgaccca
gtcaccagggaccacatgagtgccgtgctgtcacaagtgcgtcagaagctgttccagttc
ctgcagcaggaccctcacagctccctgagcaagcgtgcccgccgcctcctgatgatgctg
cagggtcttgttaaccactag
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integrated database retrieval system
