Tachysurus fulvidraco (yellow catfish): 113653384
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Entry
113653384 CDS
T08119
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030
DNA replication
tfd03410
Base excision repair
tfd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113653384 (pole)
03410 Base excision repair
113653384 (pole)
03420 Nucleotide excision repair
113653384 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfd03032
]
113653384 (pole)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113653384 (pole)
Enzymes [BR:
tfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
113653384 (pole)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
113653384 (pole)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
113653384 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
113653384
NCBI-ProteinID:
XP_027018753
LinkDB
All DBs
Position
9:4352875..4381367
Genome browser
AA seq
2283 aa
AA seq
DB search
MVLHNSGRYKGDRGGDQDKQQDDVSNLSAVKRLERSQFTDDMDARYGFERMKEPGEKTGW
LINMHPTEILDDDKRMISAVDYYFIQEDGSKFKVALPYKPYFYIATKKNCEREVVSFLSK
KFQGKISKLETIPKEDLDLHNHLVGLKRTYIKLSFNTVDDLVKVKREISPAVRKNREREK
SNDTYTSMLSSALVGGSVTTDDGDGTSKRMADQLDNIVDMREYDVPYHVRLSIDLKIHVA
HWYNVRYRGSAYPPEIVRRDDLVERPDPVILAFDIETTKLPLKFPDAETDQIMMISYMID
GQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAALIQRWFEHIHETKPNIFVT
YNGDFFDWPFVETRAAQHNLNMYQEIGFQKDSQGEYKASQSIHMDCLRWVKRDSYLPVGS
HNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQVFNKLTDDGHVLDSETYVG
GHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTLRHAVEEEEKIPLEQVTNFNQVCD
DIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGA
TCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGKPRAFHELQREEQARHEKK
RLGDYCRKAYKKVHLTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGSHKVWKKKLSA
AQENGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTGAN
IITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKTSNEKKPKVTISYPGAMLNIMV
KEGFTNDQYQELVDPASLAYQTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNE
DGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKA
ANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVIS
RKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDMDIRSILDWSYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISEMFTSEGKRQVANQTEP
GETPDMEDFGAPKRPLQPAILISTKRKRASQGEDSQTESQELELTQSWREILGPPPPMGT
TQEERLVWLRYHKKKWELQIRQRKERRKRRRMLDGEVQPAGGGVIRDGPTTGLGSFLRRT
ARSILDMPWQIVQIAETSHPGLYKLWAVIGTDLHCMKLNIPRVFYVNQRVPKQEEGATYK
KVNRILPRSNVVYYLYQYSVPEDMYQEHINEINADLSAPDVEGVYETQVPLLFRALVQLG
CLCMVNKQVVRALAGREADTFELEHLDMRSLAQFSYLEPGSVRHIYLYHHGQGHKALFGL
FIPSQRKASVFVLDTVRSNQMPNLSTLYGAERTALLEKTSEELLPPEKHQFEVRAENDVK
AIYRAVQRVLHSYKEERRGPTLIAVQSNWELRRLAAGLTVLEEFPVVPVHVTDDISYNVL
DWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPEDISIFGSDLFLARHLRKHNH
LLWLSPTARPDLGGKEADDSRLVMESDERGSVEINSPGCFSTVCVELDLQSLAVNTILQS
QHVNDMEGGASMGVSFDVIQHASLEDMMSGNQGVTAVASYDETALCSNTFRILKSMVVGW
VREITQYHNVYADNQVMHFYRWLRSPNSLLYDPALHRTLLNMMKKIFLQLVAEFKRLGSS
VVYGNFNRIILSTKKRRIDDAIAYVEYITNSIHSREIFHSLSITFSRCWEFLLWMDPANY
GGVKGKLPSSVMYGETGADKRKKGKDGDEEASEDEEDEVDEPEEDRDGEEDEVEDLIESS
WNIMHYLPQAASCQKYFLMIISAYIAAVYHSMREELRRNAPGATPIKRRGGSQATQQPAG
DVSALPGMITFSQEYVSSELTQNIFTITQKIQKKVCGTRSVSQPSEMFPVLPGSHLPLNN
PALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEEAQFRDPCNSYVLPEVICH
QCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYDTESIEMALVEALQKKLMSYTLQDL
ECAKCRGVKESNMPLYCSCAGDFKLTFSTKSFTEQVDVFRSIAAHYNMNFLLETIDWILR
MNN
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggttttacacaacagtgggagatataaaggtgacagaggaggagatcaggacaagcag
caggatgacgtgtctaacttgtctgccgtcaagcggcttgagcgcagtcagttcacagat
gacatggacgctcgctatggcttcgaacgcatgaaggagccgggagaaaaaactggctgg
ttgatcaacatgcatccgacggagatactggatgatgataagcggatgatcagcgcagtg
gattattattttattcaggaggacggcagcaagtttaaggtggcactgccctataaaccc
tacttctacatagcaactaaaaagaactgtgagagagaagtcgtctcctttttgtcaaag
aaattccaaggaaagatctcgaagctggagacgattcccaaagaggatctcgacctacat
aaccaccttgtgggcctgaagaggacatacattaaactgtccttcaacacggtggacgat
ctggtgaaagtgaagcgagagatctctcctgccgtcaggaagaacagagagagggagaaa
tctaacgacacctacaccagcatgctgtccagcgcgctcgtaggcgggagcgtgacgacg
gacgacggagacggcacgtctaagcgaatggccgaccagctggacaacatcgtggacatg
agggagtacgatgtgccttaccacgtcagactgtccatcgacctcaagatccacgtggct
cactggtacaacgtgcgctacagaggaagcgcgtatcctccggagatcgtacgccgggac
gacctcgtggaaagaccagatcctgtcatcttggcgtttgacatcgagaccaccaaactg
cctctgaagttccccgacgcagaaaccgaccagatcatgatgatctcgtacatgatcgac
gggcagggtttcctcatcaccaacagagagatcgtctccgaggacatcgaggatttcgag
ttcacccctaagccggagtacgagggccctttcacggtgtttaacgaacccgacgaggct
gctcttattcagaggtggttcgaacacatccacgagaccaaacccaacatttttgtcacc
tataacggagacttcttcgactggccattcgtggagacgcgtgcggctcagcacaacctc
aacatgtatcaggagatcggttttcagaaggacagccagggcgagtacaaggccagccag
tcgatacacatggactgcctcaggtgggtgaagagagacagttacctccctgtcggaagc
cacaacctgaaggcagcagcgaaggccaagctgggttacgaccctgtggagctggacccg
gaagagatgtgtcgcatggccaccgaggagccgcagactttagccacctactcggtgtcc
gacgcagtggctacgtactatctctacatgaaatatgttcatcccttcatcttcgccctg
tgcaccatcattcccatggagcctgacgaggtgttgcgtaaaggttcagggactctgtgc
gaggcgttgttgatggtgcaggctttccacgccaacatcattttccccaacaagcaggag
caggtgttcaacaagctcacagatgacggccacgtcctggactcggagacctacgtcggc
ggccacgtggaggccctggagtccggcgtgttccgcagcgacatcccgtgccgcttcaaa
atgaatccggcagcgttcgacttcctgctccagagggtggagcgaacactgcgtcacgcc
gtcgaagaagaggagaaaatcccgctggagcaagtcacgaactttaaccaggtttgcgac
gacatcaaaaagaagctgatctcgttaaaggaagtgccgaacaggatcgagtgcccactt
atttaccatctcgacgtaggcgccatgtatcccaacatcatccttaccaaccgactgcag
ccgtctgccatggtggacgaggcgacctgtgctgcatgtgactttaataaacctggagct
acctgccagaggaggatggcctggcagtggagaggagagatcatgccggccagtcgtagc
gagttccatcgtattcagcaacagttggagtcggagaaattcccccctctgtttcctaac
ggaaaaccgcgagccttccacgagctgcagcgtgaggaacaggcgagacacgagaagaaa
cgtctgggagattactgtcgaaaggcctataagaaggtgcacttgaccaggctggaggag
agagtcactacaatatgtcagagagagaactccttctacgtggacacggtccgagcgttc
cgagatcgccgctacgagtttaaaggatcgcataaggtgtggaagaagaagctgtctgcg
gctcaggagaacggcgacgccgcggaggtgaagcgctgtaagaacatggagatcctttac
gagtctctgcagctcgcgcacaaatgcatcctcaattctttctacggatacgtcatgagg
aaaggagcgagatggtattccatggaaatggctggcatcgtgtgtcacacaggagccaac
atcatcacacaggccagagagctgatcgaacagatcgggagacctttagagctggacact
gacggtatctggtgtgtccttcccaactccttccctgagaactttgtcatcaagaccagc
aacgagaagaagcccaaagtgaccatcagttaccccggggccatgctgaacatcatggtc
aaggaaggcttcaccaacgatcagtaccaggagctggtggacccggcgtcgctcgcctac
cagacgagatccgagaacagcatcttcttcgaggtggacggcccgtacctggccatgatc
ctgcctgcttctaaagaggagggcaagaagctgaagaagagatacgccgtgttcaacgag
gacggctctctggccgagctgaagggtttcgaggtgaagagaagaggagagctccagctc
attaaaatcttccagtcgtccgtgttcgaggctttcctgaaaggcaccaccctggaggaa
gtctacgcctcggtggccaaagtggctgactactggctggacgtgctttacagcaaggca
gctaacatgccagacgcagagctcttcgagctgatttcggaaaaccgctccatgtcccgg
aagctggaggactacggcgagcagaagtccacgtctatcagcacggccaaacgtctggcg
gagtttctcggagatcagatggtgaaggacgcggggctgagctgtcgctacgtcatttct
cgcaaacccgagggctctcccgttaccgagagggcgattcctctggccatattccaggcc
gaacctagcgttaagaagcacttcctgcgcaagtggctgaagatgcccagcctccatgac
atggacatcagatctatcctggactggagttactacatcgagagactgggcagcgccata
cagaagatcatcaccattccagcagcactacagcaggtgaagaacccggtgcctcgcgtg
cgccatccggactggctgcataagaagcttctggaaaagaacgacatctacaaacagaag
aaaatcagtgagatgttcaccagtgaggggaagagacaggtggccaatcagaccgagcca
ggtgagactcccgacatggaggattttggagctccaaagcgcccccttcagcctgctatc
ctcattagtactaagaggaagcgagcgtctcagggtgaagacagccagactgagtcccag
gagctggagctcacacagtcctggagagagatactgggtcctccgccacctatgggtaca
acacaggaagagaggctggtgtggctgcgctaccataagaagaagtgggagctgcagatc
cgccagaggaaagagcgcaggaagagacggcgaatgcttgacggagaggttcagcctgca
gggggcggcgtgatcagggacggtccgaccacagggttggggagcttcctacgcaggacg
gctcggagcatcctggacatgccctggcagatagtacagatcgctgaaaccagtcaccca
ggactgtataagctgtgggcggtgatcggcaccgacctgcactgcatgaagcttaatatc
ccacgagtgttttacgtcaatcagagagtccccaagcaggaagaaggagctacttataaa
aaggtcaaccggattttgccgcgctccaacgtggtgtattacctgtaccagtactccgtg
cctgaggacatgtatcaggaacacatcaatgagatcaacgcagacctttcggccccagac
gtcgagggcgtctacgagacgcaggtgccgctgcttttccgggcgctggtgcagctcggc
tgcttgtgtatggtcaataagcaggtggtgagagcgctggccggacgagaagccgacacc
ttcgagctggagcatctggatatgaggtcgctcgcccagttcagctacctggagccaggc
agcgtgagacacatctacctgtatcatcacggtcagggccacaaggctctgtttggcctc
tttatcccctcgcagcgcaaagccagcgtcttcgtcctggacacggttcgcagcaaccag
atgccaaacctgagcacgctgtacggagccgagcgcacggcgctgttggagaaaacatcc
gaggagctgctgcctcccgagaagcaccagtttgaagtgcgtgctgagaacgacgtgaag
gcgatttaccgcgcagtgcagcgcgttctgcacagctataaggaggagcgtcgtggtccc
actctcattgccgtgcagtctaactgggagctccggcgtctggcggcaggattgaccgtg
ctggaggagttccctgtggttcccgtgcacgtgacggacgacatcagctacaacgtgctg
gactggcagcgacacggcgcacgccgcatgatcaaacactacttaaacctggacagctgt
ctttcacaggctttcgacatggccaggtattaccacttgcccgttgggaacctgcccgag
gacatctctatattcggctcggacctctttctggcacgtcacctgcggaagcacaaccac
ctgctgtggctgtcacccacagcgagacccgacctcgggggcaaggaggccgacgacagc
cggctggtgatggagagcgacgagcgaggctcggtggagatcaactctccgggctgcttc
tccacagtgtgtgtggagttggatcttcagagcttagcggtgaacaccattctccagtcg
cagcacgtgaacgacatggagggcggagccagcatgggcgtgagtttcgatgtcattcag
cacgcatcgctggaggacatgatgtcaggaaaccagggggtgaccgctgtggctagttat
gatgagactgcgctctgctccaacacattcaggatcctgaagagtatggtggttggctgg
gttcgggagatcacacagtaccataacgtgtatgcagataatcaggtgatgcacttctac
cgctggctgcgttcccccaactctctgctgtacgacccggcgctgcaccgcacgctgctc
aacatgatgaagaagatcttcctccagctggttgccgagtttaagcggctcggttcctct
gtggtctatggaaactttaaccgcatcatcctcagtaccaaaaagcggcgcattgacgac
gccatcgcttacgtggagtacatcaccaacagcatccattcacgggagatcttccactcc
ctgtccatcaccttctcccgatgctgggagttcttgctgtggatggatccagctaactac
ggaggagtgaaagggaagttgccctccagcgtcatgtacggagagaccggcgctgacaag
aggaagaaaggaaaggacggtgacgaggaggccagcgaggatgaggaggatgaggtcgat
gaaccagaggaagaccgagacggtgaggaggatgaggtggaggacctgattgagagcagc
tggaacataatgcattacctgcctcaggctgcttcctgtcagaaatacttccttatgatc
atctcagcctacattgccgccgtgtatcacagcatgagggaggagctcaggagaaatgct
ccaggagccacgcccataaagaggcggggcggaagccaggcgacccaacagcctgccggc
gatgtcagcgcacttcctggcatgatcacgttctcccaggagtacgtgtcgagcgaactc
acccaaaacatcttcaccattacacagaagatccagaaaaaggtgtgtgggacacgcagc
gtgtctcagccgtctgaaatgttccccgtgctgccagggtcacatctgcccctcaacaac
cctgctctggagttcatcaaatacgtctgtcaggttctgtcgctggacgctaacatagtg
aaccaggtgaacaagctgaagcgggatctcttgcgcttggtggacgtcggcgagttctca
gaggaggctcagttccgtgacccctgcaactcctacgtcctgccggaggtcatctgccac
cagtgtaacttctgccgtgacctcgacctctgcaaggacccctccgtcgcccaggacggc
tcggtcctgccgcagtggttctgctccaactgccaggcgcagtacgacaccgaatctata
gagatggctcttgttgaagctctgcagaaaaagctgatgagttacacgctgcaggacctg
gagtgtgctaaatgcagaggggtgaaggagtccaacatgcctctttactgcagctgtgca
ggagacttcaagctgaccttcagcacaaagagcttcaccgagcaggttgatgtgttcaga
agcatcgctgcacattacaacatgaacttcctgcttgagaccatcgactggatcctgagg
atgaacaattag
DBGET
integrated database retrieval system
