Tachysurus fulvidraco (yellow catfish): 113654181
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Entry
113654181 CDS
T08119
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03013
Nucleocytoplasmic transport
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113654181 (upf3a)
03015 mRNA surveillance pathway
113654181 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113654181 (upf3a)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113654181 (upf3a)
mRNA cycle factors
P-body specific factors
113654181 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
113654181
NCBI-ProteinID:
XP_027019953
LinkDB
All DBs
Position
6:complement(17835000..17840785)
Genome browser
AA seq
482 aa
AA seq
DB search
MRAEKEPTTGSRDRGVVEIQLRDAQRDQDSATVNLKHKEEKKEIFTKVVIRRLPPSLSKD
QLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDIVLFRDRFDGYVFIDNKGQ
EYPAIVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKDIKIKLLKKCDRDDEVESERLKDKGDSGETERNKWEKPVGHTKAK
EPKDNRVQLESDKDQRDGHSRRQKDKDQRGREDDRKRQRHHYEFDKFMRRKEETKWGKGY
CHDRAKKDGHHHGYSYCPEMGDKTCKDDRDDMGSRKERIRNKSVLVHQEKRTSQSEGPDQ
IGGALPAKDRPAMQLYQPGARNRKHMGSGNKGFDFSQLSPEPSTEPCYELTIGTGSEKSA
DG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgaaaaggagcctacaacgggaagcagagacagaggagtcgtagagatacag
ctgcgggacgctcagagggaccaggacagtgccacggtcaatttgaagcacaaagaggag
aaaaaggaaatcttcaccaaggttgttattcgacgtcttccacccagcctgtcaaaagac
cagcttgaggagcatctcagtccactgccttcttatgactattttgaattctttcctgct
gatcaaagcctatatccacatcttttctccagagcatacatcaactttaaaaacccagag
gacattgttctattcagagatcgttttgatggttatgtttttattgataataaaggtcaa
gagtatccagccattgtagaattcgcaccttttcagaaagtttccaagaagaagctcaag
aagaaagatgccaaagcaggaagcattgaagaagatccagaatacaaacgatttctggag
aactactcttgtgatgaggagaagtcaatggccaatccagaaacattactgggagaaatt
gaggctaaaacaagagagctcatagctaaaagaacaacaccacttctggaatacattaag
aacaagaagttggagaagcagagaatccgagaggaaaaaagggaggagaggaggcgtcga
gaactggagaagaaacgtcaaagagaagaggagaaaaggaaacgtagagaagaagagagg
cgaaaacgcaaagaagcagagaagcagaagaaactatctgaaaaggatatcaaaatcaag
cttttgaagaaatgtgacagggatgatgaagtggaatcagagagactgaaagataaagga
gacagtggtgagacggagaggaataagtgggagaaacctgtaggccacaccaaggcaaag
gaacctaaagacaatagagttcagctggagagtgataaggatcagcgagatggccatagt
cgcagacagaaagataaagatcagaggggccgagaggatgaccgtaagcgacaaaggcat
cactatgagtttgacaagttcatgcgccgcaaggaggaaaccaaatggggcaaaggctac
tgtcatgaccgggcaaagaaagatggccaccaccatggctactcgtactgccctgagatg
ggggataagacatgcaaggatgaccgggatgacatggggagcagaaaggaacgtattcgt
aataagtctgtattagtgcatcaggagaaaaggacctcccagtctgaggggccagaccag
ataggaggggctctgccagccaaggaccgaccagccatgcagctgtaccagccaggagcc
cggaaccgtaagcacatgggatctgggaataaaggctttgacttcagccagctctctccg
gagccaagcaccgaaccctgctatgagctgaccataggaacagggtctgagaagagtgca
gatgggtga
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