Tachysurus fulvidraco (yellow catfish): 113654196
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Entry
113654196 CDS
T08119
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X3
KO
K12821
pre-mRNA-processing factor 40
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113654196 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113654196 (prpf40a)
Spliceosome [BR:
tfd03041
]
Complex A
U1 snRNP components
U1 related factors
113654196 (prpf40a)
Complex B
113654196 (prpf40a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
Motif
Other DBs
NCBI-GeneID:
113654196
NCBI-ProteinID:
XP_027019993
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All DBs
Position
6:complement(15785703..15799942)
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AA seq
877 aa
AA seq
DB search
MSSTDGNNAPSQAPPFPGVPPSAIPPPFMGPPGIPPHFPPMGMPPMGQRPPNMAPMPGGI
IPPPMMPPLGAPPMGQMPGMMPPMMPPMMPPRMPAATLQPTGPPGVSPVDTAATAAPGTT
TTNDSPQDDQSKKQKSVWTEHKSVDGKTYYYNTETKQSTWEKPDDLKSPAEQMLSKCPWK
EYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTVDVVAPGTTPTLTAHTDAV
LTVPAVPEAVSTIATSVAEEQPSQMPVQGGEGGSEVTVTSPKDTPTTETQASNDTSKEER
PELVKKVYKWNTKEEAKQAFKELLKEKGVASNASWEQAMKMIINDPRYSALPKLSEKKQA
FNAYKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFGEQEVWSCVP
ERDRLEIYDDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDN
PTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQKFLDE
LHDHGQLHSMSAWMEMYPTISSDIRFTSMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIK
DILKDKGFLVEISTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEA
RKMKRKEAAFKSMLKQATPSLEPDATWEGVRERFLKEPAFEDVTLESERKRIFKDFMHVL
EHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHSKKKKRSTSKSPSEHSSSGE
SERSYKKSKKHKKKGKKRRHKSASPESDGEKDRKGRDKDKDKENDKSRGKNRSESKQKSP
KRKAPKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctactgatgggaataatgctccaagccaagcgccaccttttcctggagtccct
ccatcagcaataccccctccttttatggggccacctggaataccacctcacttcccacct
atgggaatgccaccaatgggtcagaggcccccaaacatggctcccatgcctggaggcata
attccaccacccatgatgcctccgttgggtgctcctccaatgggacagatgccaggcatg
atgccaccgatgatgccgccaatgatgccaccacgcatgcctgcagcgacgttgcagccg
acaggaccgcctggtgttagtcctgtggatacagctgctactgctgcacctggaactact
accacaaacgactccccccaagatgaccagtctaaaaagcagaaatcagtgtggacagag
cataagtctgttgatggtaaaacctattactacaacacagagaccaagcagtcaacctgg
gagaaaccggatgatcttaagtcacctgcagagcaaatgctctctaagtgcccatggaaa
gagtacaagtctgacactgggaagccttattactacaactctcagactaaagagtcacgc
tggacaaagcctaaagaactcgaagaccttgaagcaatgataaaggctgaggagaatggg
acggtggatgtggtagctcctggcactactcccactctcacagctcacacagatgcagtg
ctcactgtgcctgctgttccagaggctgtctctaccatagcaacaagcgttgctgaagaa
cagccatctcaaatgcctgtgcaagggggtgagggaggcagtgaagtaactgtgacatca
cccaaggacacccccacgaccgagacacaggccagtaatgacacatctaaagaagaaaga
ccagagcttgtgaagaaggtgtacaagtggaacaccaaagaggaagcgaagcaggctttc
aaagaactgctcaaggagaagggtgttgcatctaatgcgtcctgggagcaagccatgaag
atgatcattaatgaccctcgttacagtgccctgcctaagctgagtgagaagaagcaggcc
tttaatgcctacaaggttcagacggagaaggaggagaaagaggaggccaggatcaaatac
aaagaatccaaagagacattccagcgcttcctggagaaccacgataaaatgacctccacc
accagatacaagaaagcagagcagatgtttggtgaacaggaagtgtggagctgtgttcca
gagagagacaggctggagatttatgatgatgttctcttctacttggccaagaaagagaag
gaacaagccaagcaactgaggaagaggaactgggaggcactgaaaaatatcttggataac
atggctaatgtcacataccgcaccacctggtcagaggctcagcagtacctgctagataac
cccacgtttgctgaggacgaagagctgcagaacatggataaggaggatgctctgatctgc
ttcgaggaacacattcgtgctctggagaaggaagaagaggaggagaaacagaaatctctg
ctgagagagagacgcagacagcgcaaaaacagggagtctttccagaaatttctggatgag
ttacatgaccacggccagctgcactccatgtcggcatggatggagatgtatccaaccatc
agttcagacatccgcttcactagcatgttaggacaaccgggctctacacctctggacttg
ttcaagttctacgtggaggatctcaaggctcgttatcacgatgagaagagaatcataaaa
gacatcttaaaggataagggtttcctggtggagatcagcaccagctttgaagactttggt
tcagttatcagctctgacaagagggccaccactctggatgcaggcaacatcaaactagcc
ttcaacagtcttctggagaaggcagaggcacgagagcgagagagagaaaaggaagaggcc
agaaagatgaagaggaaagaggcagccttcaagagcatgctgaagcaggccacaccctca
ttggagcctgatgctacatgggaaggggttagagagaggttcctaaaggagcctgcgttc
gaggacgtcactctggagtcagaaagaaagaggatattcaaagattttatgcatgtacta
gagcacgagtgtcagcaccatcactccaaaaccaagaaacactcgaagaaatccaaaaag
catcacaggaaacgatctcgttctcgctcaggttctgaatctgaggacgatgagtatcac
tcaaaaaagaagaaacgctccacatcgaaatctccctcagagcactcttcctcaggggaa
tccgagagaagctataaaaaatccaagaaacacaagaagaagggaaagaagagaagacac
aagtctgcttccccagagtctgatggagaaaaggacagaaagggacgcgataaagacaag
gataaagagaacgataagtctagagggaagaatcgtagtgaatccaaacagaaatctccc
aagaggaaagcgcctaaagaagagggaggatgggacacgtcaggcagtgaactgagtgaa
ggagagctggagaagaggagacgaactcttttggagcagttagatgcaccttag
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integrated database retrieval system
