Tachysurus fulvidraco (yellow catfish): 113654525
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Entry
113654525 CDS
T08119
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04382
Cornified envelope formation
tfd04510
Focal adhesion
tfd04512
ECM-receptor interaction
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113654525 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113654525 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113654525 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113654525 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tfd04147
]
113654525 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113654525 (col4a2)
Exosome [BR:
tfd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113654525 (col4a2)
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113654525 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113654525
NCBI-ProteinID:
XP_027020528
LinkDB
All DBs
Position
6:complement(19346355..19406052)
Genome browser
AA seq
1673 aa
AA seq
DB search
MKCTLRMEGVMQPQHRGLVKILRVLLICLIVLALTSEVNAGGKKHGEICGGRDCSGGCKC
YPEKGGRGKPGLLGPQGPTGPPGRVGDPGLQGLKGEKGNSGERGITGLKGAQGLIGSPGF
PGGDGIPGHPGQQGPRGKPGADGCNGTRGDPGIPGRGGNTGVPGIKGQPGLKGEKGDPLE
ISVYMERFRGEPGLPGYQGDPGLPGNKGDQGRPGFPGVQGEKGYRGLPGPKGSPTVVYPG
EKGEQGDVGAPGPQGTDELSSPFPGPNGEKGIKGEPGDLGAHIKGETGVKGFPGARGNPG
NAGQPGRKGEAGDPGVHGQPGSKGEPGEAGEVIYTGGYLGDGPPGPPGERGPPGSDGLRG
NKGLMGLPGSDAQEPLIELIGPFGPKGEKGRKGDVGENGVPATEPGPPGFEGLLGPPGPP
GPQQSWGVVLRGPEGLNGRPGNAGVKGQKGDHGHCECTLQISPPGPRGPAGDQGDRGVVG
EQGQQGDQGDQGIRGLIGLDGFPGTDGLPGPKGLKGDRVEVTEKGSPGEPGDPGRPGERG
TQGRPGTRGIDGPPGLQGLPGEGPVGEHGEKGYPGRPGPPGFPGPAGEPGQVNGAPKGAK
GITGDAGTDGYDGHPGLRGTSGDCSLQGEGGEWITAGDCTAIAGPPGEMGPKGQPGLEGM
PGPPGLKGFPGDKGIIGTKGVQGDQGTGGPPGLMGFIGPRGDLGTPGPKGLKGYSGIPGR
PGLDGDFGEKGPNGEALGASPGPSGEPGPPGHQGIKGSLGNPGTSGYPGMEGMPGMIGFK
GESGPPGLEGETGRPGPAGLFGFPGKTGYSGPPGPAGRTGLPGSRGGTGNRGDGGPPGPF
GVKGVKGEPGSDSGQGDYGPRGDTGDPGHVGRVGVPGLKGIKGPPGMAGFPGSLGRPGPK
GLQGPKGPEGMPGLQGDKGGMGQYGQKGERGVMGPAGKMSVVEMAHMKEVMKGEKGDTGR
AGNPGFTGPRGTKGLPGIPGEEGHHGLPGDPSNIKGQRGLPGAQGLPGQKGMPGLSGSPG
IPGFFGPGGNRGEKGQPGAYGAKGELGIKGLKGNQGDVIDLPGPTGPRGETGLPGLLGHK
GFLGETGVRGSPGFDGINGTKGTQGEPGEEGPPGADGQKGFQGIQGSKGWPGVPGEAGTS
GKLGHPGQIGFPGFVGIPGLHGLKGQKGLPGVAGLDNWGIPGEDGEKGEIGDPGIPNTEA
GVPGAYGLKGLTGDPGDQGEPGPPGYQGPPGAQGIPGRKGGSGDKGLPGQKGFPGFPGAT
GFPGFPSPSGIKGVRGTEGEVGTSGPRGPQGDIGDKGFPGQLGVSGEKGIKGAMGRMGVP
GSRGVQGDRGLTGSKGDTGLPGPPGTPGARGLPPVPVKIQGERGPPGPHGPQGPQGPRGN
VGTQGPPGDPGPVGPQGQKGMPGLPGTPGIPGVRGDIGPMGHRGLLGLEGNRGRPGTTGP
TGMPGRSVSVGYLLVKHSQSDHSPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCL
PRFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPIPMMPVEESDIKPYISRCSVCEAPSV
AIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIEC
NGAKGTCHYFSNKHSFWLTSIDQSFHSYPESETLKAGQLLSRISRCQVCMKNL
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtacattgcggatggagggagtgatgcagccacagcaccggggactagtaaaa
atcctcagggttcttttgatttgtctcatcgtcctcgctctgacttcagaagttaacgca
ggtggtaagaagcatggtgagatatgcgggggcagagactgcagtggcggttgtaagtgc
tatcctgagaaaggtggaaggggcaagccaggcctccttggacctcagggccccacaggg
cctccaggacgagtaggtgaccctggcctgcaaggtctgaagggagagaagggtaactcg
ggtgagagaggcatcacaggactgaaaggggctcagggattgataggaagtccagggttt
ccaggaggagatggtataccaggtcacccaggccaacaaggccctcgaggaaaacctggt
gctgatggctgcaatggtacccggggagatcctggaatacctggtcgaggaggaaacact
ggtgttcctggaataaaaggtcagccaggcttaaagggtgaaaagggggaccccctggag
atcagcgtttacatggagagatttcggggtgaaccaggacttccaggatatcaaggagac
cctggccttccaggtaacaaaggggatcaaggacgaccaggattcccaggtgttcagggt
gaaaagggttatagaggacttccaggaccaaagggcagtccaactgtagtctatcctgga
gaaaaaggagaacagggggatgttggagcgccagggccacaagggactgatgagttatcc
agtccatttccgggccccaatggcgagaaaggtattaaaggtgaaccaggagatttgggg
gctcatatcaaaggagagacaggagttaaaggatttcctggagcccggggcaatccagga
aatgctggccagccaggaagaaagggtgaagctggggatccaggtgttcatgggcagcca
ggaagcaagggggagccaggagaggcaggagaggtgatctatacaggtggataccttgga
gacggcccaccaggtcccccgggagaacgtgggccaccagggtctgatggtctcagagga
aataaaggattaatgggtttgcctgggtcagatgctcaggaaccgctaatagagttaatt
ggcccttttggaccaaaaggagaaaaggggaggaaaggtgatgttggggaaaatggtgtc
ccagccacagaacctgggccaccgggatttgaaggcctactaggacctcctggaccacct
ggaccacaacaatcatggggtgttgttttaagagggcctgaagggctaaatggacgtcca
ggaaatgctggagtgaaaggacaaaaaggtgaccacggtcattgtgagtgcactttgcaa
atatcccctcctggaccccgtggcccagctggtgatcagggtgaccgtggagtagtaggc
gagcagggtcaacagggtgatcagggagaccagggaatcagaggcttaattggtttggat
ggctttcctgggacagatggactgcctggacctaaaggcttgaagggagacagagtagag
gttacagagaaaggatcacctggagaaccaggagacccaggtagaccaggtgaacgagga
actcagggcagacctggaactagaggaatagatggtcctcctggacttcagggtcttcct
ggagaagggccagttggtgagcatggagagaaaggctacccaggaaggcctggtccaccg
gggttcccaggcccagcaggtgaacctggtcaagtaaacggagcacctaagggtgctaag
ggcatcactggtgatgcaggaacagatggttatgatggacacccaggcttacgtggtact
tcaggagactgtagtctacaaggagaaggaggcgagtggattacagcaggagattgcaca
gcaatagctggacccccaggggagatgggtcccaaaggacaacctggattggaaggaatg
ccaggacctcctggcctaaaaggatttccaggagataaaggcattataggaactaaagga
gttcaaggagaccagggcactggaggcccacctggtctaatgggctttattggacctcgt
ggagacttaggcactcctggaccaaaaggtctcaaaggttattctggtatcccggggagg
ccaggacttgatggtgattttggagaaaagggtcctaatggtgaggctctaggagcatct
cctgggccctcaggtgaaccagggccaccaggacatcaggggataaaaggttctcttgga
aatcctggcacaagtggatacccaggcatggagggaatgcctggaatgattggattcaaa
ggtgaatcaggtcccccaggattagaaggagaaacaggaaggcctggaccagcaggacta
tttggtttccctgggaagactggttactcaggaccccctggacctgcaggccgcactggg
ctaccaggatctagggggggaacaggcaatcgaggagatggtggtcctccagggccattt
ggagtaaagggtgttaaaggtgaaccaggaagtgattctgggcaaggagattacggacca
cggggggatacaggagaccccggacatgttgggcgggttggtgttcctggacttaaaggt
ataaaaggccctccgggcatggcaggtttcccaggtagtttaggaaggcctggtccaaag
ggccttcaaggaccgaaagggccagaaggaatgccaggcctacaaggagataaaggaggc
atgggccaatatgggcaaaaaggtgaaagaggagttatgggccctgcaggtaaaatgtct
gtcgtagaaatggcacatatgaaagaggttatgaaaggtgaaaaaggagacactggacgt
gcaggaaatccaggtttcactgggccccgaggcaccaaaggattaccagggattccagga
gaagaggggcatcatggattacctggggatcccagcaatataaaaggccaacgaggactg
cctggagctcagggacttcctgggcagaagggaatgccaggcctcagtggatccccagga
attccaggtttttttggaccaggtggcaataggggagagaaaggacaacctggtgcttat
ggagcaaaaggagagcttggaatcaagggcttaaaaggtaaccagggtgacgttatcgat
ctcccaggacccacaggccccagaggggaaactgggctgcctggactattaggtcacaag
ggtttcctaggtgagactggagtaagaggaagtcctggttttgatggtattaatggaacc
aaagggactcaaggtgaacctggagaagaagggccaccaggtgctgatggccaaaaaggc
tttcaaggaatccagggctctaagggctggccaggagtgccaggagaggcagggacctct
ggtaaactaggacatcccggacaaataggttttcctggctttgttgggattccaggattg
catggccttaaaggtcaaaaaggccttccaggtgttgcaggtcttgacaattgggggata
ccaggtgaggatggagaaaaaggtgaaataggagatccaggtattcctaacacagaggct
ggggtccctggagcttatggccttaaaggtttaacaggagatccaggtgatcagggtgaa
ccaggccctccaggatatcaagggcccccaggagcacaaggaattcctggcagaaaaggt
ggatcaggagacaaagggcttcctggtcagaaaggctttccaggttttcccggagccaca
ggttttccaggttttccatctccatctgggattaaaggagttcgcggtactgaaggggag
gtcggaacctcaggaccaagaggtccacaaggggacataggagacaaaggatttcctgga
cagcttggtgtgtcaggagaaaaaggaataaagggtgccatgggaaggatgggtgtccca
ggatcacgtggtgtacaaggtgatagaggacttactggatctaaaggggataccgggcta
ccaggcccacctggcacccctggtgccagaggactccctccagttcctgtgaagatacaa
ggggagagaggaccccctggtcctcatggtccacagggaccacagggaccgagaggaaat
gttggcactcaaggaccccctggggatccaggtcctgtgggaccacaggggcaaaaggga
atgccagggctgcctggaacaccaggaattccaggtgttcgtggggatatcgggccaatg
ggacaccggggacttctgggcctagaaggaaaccgaggccgtcctggtactactggtccc
accggtatgcctggacgcagtgtcagtgttggctacctgctagtaaagcacagtcagtct
gatcattctccaatgtgccctgtgggaatgtccaagctgtgggatggctacagcttgctt
tattttgaagggcaggagaaagctcataatcaggaccttggtctggcaggctcttgtctc
cctcgtttcaacaccatgccattcctctattgcaaccctggtgacatatgctactatgct
agtcgtaatgacaagtcctattggctttctacaactgctcccattcccatgatgcctgtg
gaagagtcagatataaagccttatatcagccgatgttcagtatgtgaggctccatctgtg
gctatagctgtgcacagtcaggatataactatcccacaatgccctgcaggctggagaagt
ttatggattggctattctttcctcatgcatacggcagctggagatgaaggaggtggtcaa
tccctggtgtctccaggctcgtgtcttgaggatttccgcaccactcctttcattgagtgt
aatggagctaagggtacatgtcactacttctctaacaagcatagtttctggctgacgtcc
attgaccagagcttccacagttaccctgagtcagagactctgaaggctggacagctactc
tcacgtatcagtcgatgccaagtctgcatgaagaacctgtga
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integrated database retrieval system
