Tachysurus fulvidraco (yellow catfish): 113654714
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Entry
113654714 CDS
T08119
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04382
Cornified envelope formation
tfd04510
Focal adhesion
tfd04512
ECM-receptor interaction
tfd04518
Integrin signaling
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113654714 (col4a5)
04518 Integrin signaling
113654714 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113654714 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113654714 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113654714 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tfd04147
]
113654714 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113654714 (col4a5)
Exosome [BR:
tfd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113654714 (col4a5)
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113654714 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113654714
NCBI-ProteinID:
XP_027020789
LinkDB
All DBs
Position
1:complement(35914359..35958184)
Genome browser
AA seq
1689 aa
AA seq
DB search
MNQKLKSLQKFAVLLFISLSIDVQQSESAVCHGCGTGSKCDCTGVKGARGDRGFPGQSGH
PGLPGFPGPEGPIGSRGEKGDDGPPGPSGPKGIRGPPGLPGFAGTPGVPGIPGLDGPPGP
KGIAGCNGTKGDRGLPGSPGFPGIDGAPGLRGESGQKGEPGEVIISETLGTSGGPGISGL
PGPKGEPGRPGLQGPSGPQGPRGYEGPPGPPGLQGPKGNMGLNFQGPKGEKGETGLQGPP
GPPGQVDQLIGETDGVILRGEKGDRGPPGPTGYPGSPGPPGPYGGPKGDKGEPGDSGKRG
KPGKDGDPGPPGLQGVPGDPGVPGLPGGIGERGDKGERGLPGPPGVVLPSSLNQVGPKGD
PGLTGNPGRKGEPGISGVPGPPGQPGRPGIGIQGPPGPPGYPGERGQKGDQGSPGASLPG
SPGRPGPQGFQGLPGPPGPPGISTGSENCLPGPTGLPGLNGDPGYPGETGQKGEKGIPCV
NCFSSGNLIPGPQGPPGPPGPPGNPGFPGYKGDRGSPGSPGFMGPPGVPGAKGLSGAPGE
KGDPGEAVSFDGMKGDKGDTGFPGPPGLPGRDGAPGRDGSPGLPGPKGAPGSLLLKGERG
PAGEPGPSGSPGDRGLPGPPGFGPQGPPGEKGFQGVSGRQGPPGPPGQKGESGLTLSQKG
EPGPRGTDGEPGLPGNPGDPGQPGSPGFPGLSGQKGEPGLPGIGFPGPPGPKGFPGIAGS
PGSPGRPGPPGVDGQPGVPGPRGPKGEPGFGIPGPPGPPGLTGSKGFPGAKGDAGFPGNP
GAPGRPGIDGRPGPKGDFGPPGSLGAPGPQGPPAFGLPGLPGPTGPPGPMGNPGSPGLNG
EKGDPGSPGLDIPGLPGDQGRPGLTGPPGPPGPSGIPGNPGQDGLPGLPGQKGEMGVMGA
TGPAGNPGSPGVPGFPGPKGDNGQSGVPGTQGSPGLKGNKGDQGLRGPAGFTQPGGSEKG
AKGDPGSQGFSGAPGAKGIPGLPGDPGIPGQDGRPGTPGPPGPKGDPGLPGTSGLPGSQG
PKGSMGEMGLPGPSGIKGIPGQPGRPGQPGSPGTPGFPGQKGDPGTPGFGQPGAPGAKGE
PGSSGAPGTTGPKGQQGPPGSSGLPGNPGPKGDPGLPGFQGAPGAIGPKGLDGVPGPPGL
AGSPGRPGTPGPSGLPGVPGDKGQAGRDGIPGSAGLKGEPGVPGYGIPGSSGIPGMPGQK
GDPGPPGQPGSPGYPGTKGDIGSPGATGGPGLQGPPGPRGQSIPGQKGIQGPPGPPGRVG
PEGPPGPPGPEGTRGPPGSGGVKGEKGYPGNPGLPGTPGQKGNTGPPGLMGPPGAPGSVG
FKGDVGLPGVTGFPGPKGHPGSAGGPGLPGDPGEPGHPGIPGNPGQAPAPIVLKGEKGLP
GPPGPPGSRGLPGEAGREGAQGQSGSPGDPGPDGPPGFNGPPGAKGDSGPSGQPGQRGSP
GPPGPDGIPGPPGPPGLSSAAHGFLITRHSQTTDVPQCPPGTSIIYDGYSLLYVQGNERA
HGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGENIK
PYISRCAVCEAPAMVIAVHSQTIGLPTCPQFWEPLWIGYSFMMHTSAGAEGSGQALASPG
SCLEEFRSSPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLQTRVSRC
IVCMKRTLT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaagttaaagagtctgcagaagttcgcggtgcttctcttcatatctctgtcc
atagacgttcagcagtccgagtcggcggtatgtcatggttgtgggactggatcaaagtgt
gactgcactggagtgaaaggagcgaggggtgatagaggtttcccaggtcaatcaggtcat
ccaggtttaccaggatttcctggaccagaagggccaattggatctcgtggagagaagggt
gacgatggacctccaggaccatctggacctaaaggaataagaggacctcctggacttccg
ggatttgcagggacaccaggagttccaggtattccaggattggatgggcctcctggtcca
aaaggaatcgcaggctgtaatggaacaaagggtgacagaggattaccaggaagtccaggt
ttccctggtatagacggtgcaccaggactacgtggtgagagtggacagaagggagaacct
ggtgaggtcatcatttcagaaacactgggaacatcaggaggcccaggaatctcgggtctg
ccaggacctaaaggagagccaggccggcccgggttgcaaggtcctagcggtcctcagggt
ccaagaggttacgaagggcctccaggtcctcctggtcttcaagggccaaagggaaatatg
ggtctgaacttccaagggccaaaaggagagaagggtgaaactggcttacaggggcctcct
gggcctccagggcaagtcgaccagttaataggtgaaacagatggagtgattcttcgagga
gagaagggtgaccgtggaccacctggaccaactggatatcccggttctcctggaccacct
ggcccatatggaggcccaaagggagataagggagagccaggagattctggaaagaggggt
aaacctggtaaagatggggatccggggcctcctggacttcagggggtaccaggagaccct
ggtgtacctggacttccaggaggaattggagaaagaggggacaaaggtgagcgaggatta
cctggacctccaggcgtggtgttaccctcatccctgaaccaagtaggacctaaaggagat
cctgggcttacaggaaaccctggaaggaaaggagagccggggatatctggggtcccagga
ccaccaggtcagccaggtcgtccaggaattggaatacaaggcccacctggcccccctggt
tatccaggagaaagaggacaaaagggtgatcaaggatctccgggagcttctcttccaggt
tctcctggcagacctggaccgcaaggttttcaaggacttccaggacctccaggacctcca
ggaatatccactggtagtgaaaactgtctcccaggacctactggtcttccaggcctgaat
ggggaccctggttacccaggggagacaggccagaaaggtgaaaaggggattccatgtgtg
aattgtttctcaagtggcaacctcattcctggaccgcagggcccacctggacctccagga
cccccaggcaatcctggattccctggttataaaggagacaggggatccccaggcagccct
ggtttcatgggcccaccaggtgtaccaggagcgaaaggtttatctggagcaccaggagag
aagggtgaccctggtgaagcagtttcatttgatggtatgaagggagataagggagacaca
ggattccctggccctccaggtctgcctgggcgggatggagcacctggtcgagatggatct
cctggattgcctggtcccaagggtgcacctggttccttattgcttaaaggtgaacgtggc
ccggctggagagcctggcccttcaggttctcctggagacagggggcttcctggtccccct
ggatttggcccacagggacctcctggagagaaaggtttccagggcgtgtcaggaaggcaa
ggacctcctggacctccaggtcagaaaggtgaatcaggtctgaccctctctcagaaagga
gaacctggacctagaggaactgatggagaaccaggtctaccaggaaatccaggtgaccct
ggccaacctggctcccctggttttccaggattatctggccaaaaaggagaacctggtctc
ccgggtataggttttccaggcccaccaggtcctaaaggattcccaggtattgctggaagt
ccaggcagccctggcagacctggacctccaggtgtggatggacaacctggtgtaccagga
ccgcgtggacctaagggcgaacctggttttggtattcctggaccccctgggccccctggt
ttgactggcagtaagggttttccgggggctaaaggtgatgccggattccctggaaatcca
ggtgcacctggccgacctggtatagacggtcgtccaggccctaaaggtgattttggccct
cctggttctctgggtgcacctggccctcaaggcccccctgcttttggactacctggactg
cctggaccaacaggaccccctggacctatgggcaatcctggttcccctggtttgaatggt
gagaaaggagaccctggttccccaggacttgatattccaggcttgcctggtgaccaaggt
aggcccggattaactggacctcctggtcctcctggcccttctgggatccctggaaaccct
ggccaagatggactacctggattaccaggacaaaagggagaaatgggtgtgatgggtgct
acaggacctgctggtaatcctggcagcccgggtgttccaggatttcctggaccaaaaggt
gataatggtcagtcaggagtgccaggaacccaaggaagtccaggattaaagggaaataaa
ggtgaccaaggtctaagaggcccagctggtttcacccaacctggtggctcagaaaaagga
gctaaaggagacccaggatctcaaggatttagtggtgctccaggagcgaaaggtattcct
ggccttccaggagacccaggtattcctggacaggatgggcgtcctgggacacctggaccc
ccaggtcccaagggagatcccggacttccaggaacatcaggtctccctggttctcaaggg
ccaaagggtagcatgggcgagatgggattgcctggcccttctggaattaaaggaatccca
ggtcaacctgggcgacctggacagcctggctctccaggaacaccaggatttccaggacag
aaaggagaccctggaacaccaggatttgggcaaccaggagctccaggagccaagggtgaa
cctgggtcttctggtgctcctggaactacagggccaaaaggtcaacaggggcccccagga
agttcaggattgcctgggaaccctggtccaaagggtgatccaggcctcccaggattccaa
ggtgcacctggtgctattggccctaagggtctggatggagtccctggcccccctggtcta
gcaggatcacctggaaggcccggaacccctggtccatctggtctgccaggtgtacctgga
gacaagggtcaagctggtcgtgatggtattcctggatcagcaggattgaaaggagaacca
ggtgtaccaggttatgggatcccaggttcttcaggcattcctgggatgccaggtcaaaaa
ggtgaccctggtccccctggccagcctggcagccctggctaccctggaacaaagggtgat
ataggatcccctggtgcaacaggtggccctggtctccaagggccccctggtcctcggggt
cagtcaattccagggcaaaaaggcatccagggtcctcctggcccaccaggaagagtaggc
cctgaaggtcctccaggtcctcctggcccagagggtacccgtggaccaccaggttctgga
ggagtgaagggtgagaaaggctaccctggaaaccccggattgcctggtacacctggacag
aaaggaaacaccggaccaccaggtttgatgggccctcctggagctcctggaagtgttggg
tttaaaggagatgtcggccttccgggcgttacaggatttccaggacctaagggacatcct
ggtagtgctgggggtcctggcctgcctggggatcctggtgaacctggtcatccaggtatt
cctggtaatccaggtcaagcgccagcccctattgtgttaaaaggtgaaaagggtctccct
ggtcctccgggacctccaggatcccgagggctcccaggagaggcaggacgggagggggct
cagggtcagtctggtagtcctggtgatccaggccctgatggacctccaggattcaatggt
ccacctggagcgaaaggagattcgggaccatctggacagccgggtcaacggggttcacct
ggcccacctggtccagatgggattccaggtcctccaggacctccaggtctttcatcagca
gctcatggcttcctgattacgcgtcacagtcagacgacagatgtgcctcaatgcccacct
ggcacctctatcatttacgatggctattctctgctttacgtacaaggcaatgagagggca
catggccaggacctgggtacggctggaagttgtctacgtcgtttcagcaccatgcctttc
atgttctgcaacatcaacaacgtgtgcaacttcgcttcccggaatgactactcctattgg
ttgtctactcctgaacccatgcccatgagcatggctcctatccaaggagaaaacattaaa
ccctacatcagcagatgtgctgtatgtgaagccccagctatggttatagcagtgcacagt
cagaccatcggactgccaacatgtccgcagttctgggagccactgtggatcggctattcc
ttcatgatgcacactagtgcaggtgctgagggctccggtcaggctttggcctcgcctggc
tcctgtctggaggagtttcgctcatctcctttcatcgagtgtcatggtcgtggaacctgc
aactattatggcaactcttacagcttctggctggccacagtcgaacagtctgaaatgttc
aggaagccacagtctgagacgctgaaagcaggcaatctccagacccgcgtaagccgctgt
attgtgtgtatgaagagaacgttaacatag
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integrated database retrieval system
