Tachysurus fulvidraco (yellow catfish): 113655319
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Entry
113655319 CDS
T08119
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113655319 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113655319 (msh6)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113655319 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
113655319
NCBI-ProteinID:
XP_027021601
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Position
4:7758224..7769443
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AA seq
1368 aa
AA seq
DB search
MAKQSSIFNFFTKSPPAVAKTKSNPSPVEADLPSVSKSSSFPKEEAKQAAQSSKKSVGNS
SRSVPKVGHVNTVGQTDTKLSSSFSFHAGDLVWAKLEGHPWWPCMMVPQPLTGQQMRGRG
QDQRVHVHFFDEPATRGWVRTKYVREYKGSNSADAKAGGLFYSGKPVIRKALELADRVLQ
DSPDQRLKIPVCMDASDEEAEDEEMMEAEKSILSEDELSEEEVQMAKPSRRSSRPAAEHA
QKPKRRRIVVASDSEGSGEEFKPDQAETSSEDEEEDGVVSDVEQNTPESEPDSPVKPVKR
KRASEKSAKTKNTPMHSEIHKSNPVILAADTKSRLSAFSAPDSFESQGNAVGNLDATGVW
DHEKLDWLQDGKRKDTQRKRQSDKNYDPTTLYVPEDFLNKVTPGMRRWWQLKSEMFDTVL
FYKVGKFYELYHMDAVIGVNELGLTFMKGNWAHSGFPEIGFGRFSDVLVQKGYKVARVEQ
TETPEMMEARCKAMARPTKFDRVVRREVCRVITRGTQTYSVLDGAPSEAESKYLLSVKEK
NQEENLGQCHIYGVSFIDSSVGRFYVGQFQDDRHCSRLRTLLAHYVPAQVLIEKGNLSAE
TQKIFKTSLSSAMHESLNAGSQFWDAQKTLKTLADEDYFKESREEGGSSGSDLPKVLKAM
TSESDSLGLTPKEGYELALSALGGCIFYLKKCLVDHELLSMANFQEYVPVDVEIQQSENE
SNFFAQTHQRMVLDGVTLANLEILQNSSTGGTEGTLLEQLDTCCTPFGKRLLKQWLCGPL
CNPASINDRLNALEDLMAVPAQATEVTELLKKLPDLERLLSKIHSMGTPLKGKDHPDSRA
VLYEETVYSKRKIADFLSTLEGFKSMQEIVSVMESISLGFKSKLLRQIVILKTINDEGLF
PDLRPELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALNGIKECEGNLQDYLVRQKKRL
GCKNLSYWGTGRNRYQMEVPDSVSERSIPEEFEVRSTKKGWKRYSTKEIEHMFSELQGWE
DKRDASLKDCMRKLFYNFDKNYRDWQTAVECMSVLDVLLSLSRYSQSGNGTMAKPKIVLP
GSSPHCSPFLDLRGSRHPCVTKTYFGDDFIPNDICIGCPSSEEEGSENKKALAPCVLVTG
PNMGGKSTLMRQCGLIVILAQLGCYVPAESLCLTPVDRVFTRLGASDRIMSGESTFFVEL
SETASILLHGTTHSLVLLDELGRGTATYDGTAIASAVVKELSQRICCRTLFSTHYHSLVE
DYAQDSAVKLGHMACMVENECDEDPSQETITFLYKFIGGACPKSYGFNAARLAAIPEEVI
QSGHCKAREFERSTLALRIFKKVCSFAEDPSASHEQLARLVQLTGNLF
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcaaagctccatttttaatttctttacaaagtcgccgccagctgtcgcgaaa
acaaaatcgaatccgtctccagtcgaagcagatttgccttcagtttccaaatccagcagt
ttcccaaaggaagaagctaaacaagcagctcagagcagtaagaagtctgtgggaaactcc
agcaggtctgtgcctaaagtcggccatgtcaacactgtgggacaaacagacacaaaactg
agctcatcattctcttttcatgctggtgatctggtatgggcgaaattagaaggacatcca
tggtggccttgcatgatggtgccccagccattgacaggccagcagatgaggggcaggggc
caggatcagagagttcatgtccatttttttgatgagccggcaaccagaggctgggtcaga
acaaaatatgtgcgagaatataaaggatccaacagtgctgacgccaaagcgggcggtttg
ttctacagtggcaagcctgtgattcgcaaggctctggagttggcagaccgtgtgctgcag
gacagtcctgaccagagacttaagatacctgtctgtatggatgcctctgatgaggaagcg
gaggatgaagaaatgatggaggctgaaaaatcaatactatcagaagatgaactgtcagaa
gaagaggttcagatggcgaagcctagcaggcgctcatcacgtcctgcagcagagcatgct
cagaaacccaaacggcgacgtattgtggtggcctctgatagtgagggctctggtgaagag
ttcaagccagatcaggcagaaaccagcagcgaggatgaggaggaagatggggttgtcagt
gatgtggagcaaaatacacctgaatctgaaccggacagtcctgtgaaacctgtaaaacgg
aagcgtgcatcagagaaaagtgctaaaacaaaaaatacgcctatgcactcagagattcac
aagagcaatccggtgattcttgcagctgacacaaagtcacgtctgtctgctttttctgcc
cccgacagctttgagagtcagggcaatgctgtaggaaacctggatgcgactggtgtgtgg
gaccatgagaaattggactggctgcaggatggcaagcgaaaagatactcagagaaagcgt
cagtcagataaaaactatgatccaaccactttatatgtgcccgaagactttcttaacaag
gttacacctggtatgcgtcggtggtggcagctcaagtcagagatgtttgatactgttctt
ttctataaagttggcaaattttatgagctctaccacatggatgctgtgattggtgtcaat
gagttggggcttactttcatgaaaggcaactgggcacattctggtttccctgagataggt
tttggccgcttctctgatgtgcttgtacaaaaaggttacaaggtggcacgtgtagaacag
actgagacccctgaaatgatggaagcacgatgcaaggctatggcgcgtcccactaaattc
gatcgtgtagttcggagagaggtatgcagagtaatcacccgtggcactcagacgtatagt
gtgcttgatggtgccccatctgaggcagagagcaagtacctgttgagtgtgaaagaaaaa
aatcaggaggaaaatttaggccaatgccatatatatggggtcagcttcattgacagctct
gtgggtcgtttttatgtaggccagttccaagatgaccgccactgttcccgtctgcgtacc
ttactggctcattacgtgccagcacaagtgctaattgagaaaggtaacttgtcagctgag
acacagaagatctttaagacctctctttcctctgcaatgcatgagagtcttaatgctggc
tcacaattctgggatgcccagaaaaccctaaaaaccttggcagatgaagactactttaaa
gaaagtagagaagagggtggttcttcaggatcagatctccccaaggttttaaaagcaatg
acttctgaaagtgactctctaggtcttactcctaaagaaggatatgaacttgctctctct
gcacttgggggatgcatattctaccttaaaaaatgtctggtggatcatgagcttctttcc
atggctaacttccaggaatatgttccggtagatgtagagatacaacagtcagagaatgaa
tcaaatttctttgcccaaacgcaccagcgcatggttctggatggagtgacactggccaac
cttgagattctccagaatagttctactggaggtacagaaggtactctgctcgaacagttg
gacacctgctgtactccttttggtaagaggctattaaaacagtggctctgtggtcccctc
tgtaacccagcctcaattaatgatcggttaaatgctctggaagacctaatggctgttcca
gctcaagctactgaggttacagaactcctgaagaaacttccagaccttgagaggttgctc
agcaaaatccatagtatgggtactcctctgaagggaaaagaccacccagacagcagagcg
gttctttatgaggagactgtctatagcaaacgcaagattgctgacttcctttcaacgctg
gaagggttcaaatctatgcaggaaatagtgtcagttatggagtccatctctctaggattc
aaatctaaattgctccggcaaatagtgattctaaaaacaataaatgatgagggattgttt
cctgatcttagacctgagctgaagcgctgggacacagcttttgaccatcaaaaagcacgt
acaactggtgtgatcacacccaaggctggctttgacccagagtatgatcaggctctgaat
gggatcaaggaatgtgagggaaatctgcaagactacttggttcgacagaagaagagactt
ggctgcaagaatctatcttactggggtacgggacggaaccgttatcaaatggaggttcca
gacagtgtttctgagaggagcataccagaagaatttgaggtgcggtccacaaagaaaggc
tggaaaagatactcaacaaaagagattgagcatatgttctcagagttgcagggctgggag
gacaaaagggatgcgtcactgaaagattgcatgagaaaactgttttacaactttgataaa
aactacagagactggcagactgcggtggagtgcatgtcagttcttgatgtgctgttgagt
ttgtcccgctacagccagagtgggaatgggacgatggcaaaaccaaagattgttctgcca
ggaagtagcccacattgttcccctttcctggacctaagaggttcccggcacccctgtgta
accaaaacctattttggtgatgactttattccgaatgacatctgtattggttgtcctagc
agtgaggaagaggggagcgaaaacaagaaggcactagccccatgtgtacttgttacaggg
ccaaacatgggaggcaagtcaacccttatgaggcagtgtggcctgattgtgatcttggca
cagttgggttgctatgtgcctgctgaaagcctgtgtctaacccccgtggaccgagtattc
actcgcctcggtgcctcagatcggatcatgtctggtgagagtactttttttgtggagctt
agtgaaacagccagtatcctcttacatgggaccactcattcacttgttcttcttgatgaa
ctgggcaggggtacagccacctatgatggcacagccatagcaagtgcagtggtgaaggaa
ctttcacagaggatctgctgccgaactctgttctccacccactaccactcactggtagaa
gactatgctcaggactctgctgttaaacttggtcacatggcctgcatggtggagaacgaa
tgtgacgaggatcctagccaagagaccatcactttcctgtacaagttcatcggtggtgct
tgtcccaagagctacggatttaatgctgcccgccttgctgccatcccggaagaggtgatt
cagtctggacattgtaaagcccgtgagtttgagaggagcaccttggctctgaggatcttc
aagaaagtgtgttcatttgcagaagatccctcagccagccatgaacagcttgccagactt
gttcagctgactggaaacctgttctag
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