Tachysurus fulvidraco (yellow catfish): 113655630
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Entry
113655630 CDS
T08119
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113655630 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113655630 (cpsf3)
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113655630 (cpsf3)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113655630 (cpsf3)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113655630 (cpsf3)
U7-dependent histone pre-mRNA processing factors
113655630 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
PAP-OAS1
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
113655630
NCBI-ProteinID:
XP_027022056
LinkDB
All DBs
Position
16:complement(10740273..10748904)
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKSDAPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSYKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALILEYEENDDERIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKRNFSYHILTPSDLSNYTDLSMSTVKQSQAIPFTGPFSLLHSQLHHL
AGHVEEMETAEKNTLRIFNSITLIHDANMVILEWIANPLNDMYADAVATVVLEVQSNPKA
QKPIQPTEEKVDMDVFQNRLQIMFHDMFGEECVDFKDKRNLSVTVDGKTAYINLETRTVE
YEEGSVDDESLREMVEHAVERLYDAMNPVT
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaagcgtaagtcagatgctccggtgcccgctgaggaaagcgaccagcttctc
ataagaccgctgggagctggtcaagaagtgggtagatcctgcatcattctggaattcaag
gggcgtaaaataatgctggactgtggtatccaccctggtttagagggaatggacgctttg
ccatacattgatttgatcgaccctgctgaaatcgatctacttctcatcagtcactttcat
ctggaccactgtggtgcactgccatggtttttacagaaaacaagttataaaggaaggact
tttatgacccacgcgaccaaagctatttaccgttggctactttctgactacgtcaaagtc
agtaatatttcagcagatgacatgttgtatacagagacagacttggaagaaagcatggac
aagattgagacgatcaacttccatgaggtgaaagaggtggctggcattaagttctggtgt
taccatgctggccatgtcttgggtgcagccatgtttatgatcgagatcgctggtgtgaag
attctttatactggagatttctctcgacaagaagacagacatttaatggcagcggagatt
cctagcgttaagccagacatcttaatcacggagtctacatatggaacccacatccatgag
aagagagaggaaagagaagcgcgtttttgtaacacagtccatgacatcgtgaatcgagaa
ggccgctgtctaatccccgtcttcgccctgggtcgagcacaagagctcttgctcatcctc
gatgaatattggcagaatcatcctgagcttcatgacattcctatttactatgcctcatcc
ctggccaaaaagtgcatggctgtgtaccagacttatgtgaacgccatgaatgacaagatc
cgcaaagccatcaacatcaacaacccctttgtcttcaagcacattagcaacctcaagagc
atggaccattttgatgacatcggccccagtgtggtgatggcgtctcctggtatgatgcag
agtggcctctctagagagctgtttgaaagctggtgcactgacaagaggaacggtgtgatc
atcgctggctactgtgtggagggaacgcttgccaagcacatcatgtctgagccggaggag
atcaccaccatgtcgggccagaagctgcagttgaagatgtctgtggactacatttccttc
tcagctcacactgactaccagcagaccagcgagttcattcgagcactcaaaccaccccat
gtgatactggtccatggagaacagaatgagatggcccgcctcaaagcagctctcatttta
gagtatgaagaaaatgacgacgagcgcattgaggttcacaatccccgcaacactgaggca
gtcacactcaatttcagaggagagaaactggccaaggtgatgggttctcttgcagataag
aagtgtgcacagggtcagagggtatctgggatcttggtgaaacgtaacttcagttatcac
atcctcacgccctcagatctctcgaattatacagatttgtctatgagcacagtgaagcag
tctcaagccattcccttcactggacccttctctctactgcacagccagctacatcactta
gcagggcatgtagaagagatggagacagccgagaaaaacacattaaggatatttaacagc
atcacactgattcatgatgccaacatggtcatactggagtggattgccaaccctctgaat
gacatgtatgcggatgcagtcgctactgtggttctggaggtccagtcaaatccaaaagcc
cagaaaccaatacagcccacggaggagaaggtggacatggatgtcttccagaacagacta
cagatcatgttccatgacatgtttggtgaggagtgtgtagactttaaggacaaacgcaat
ctgtctgtaacagtcgatggcaagactgcctacattaacctggagaccaggacggtggag
tatgaggaaggcagcgtcgatgacgagtctctcagagagatggtggaacacgctgtagag
aggctttacgatgccatgaatcctgtgacatga
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