KEGG   Tachysurus fulvidraco (yellow catfish): 113655729
Entry
113655729         CDS       T08119                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tfd01009]
    113655729 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tfd03036]
    113655729 (kdm5bb)
Enzymes [BR:tfd01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     113655729 (kdm5bb)
Protein phosphatases and associated proteins [BR:tfd01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     113655729 (kdm5bb)
Chromosome and associated proteins [BR:tfd03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    113655729 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 PHD_5 PHDvar_NSD DUF8114
Other DBs
NCBI-GeneID: 113655729
NCBI-ProteinID: XP_047678867
LinkDB
Position
14:8796329..8818236
AA seq 1535 aa
MMTLLIRFSPVANLLYSLFTCKCARARAHTHTHTHTPVLKRATWRAALPHHCDIEFGLKD
DTFDWQPPFACDVDRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVER
KILDLYHLNKLVSDEGGFDAVCKDRKWTKIAMTMGFVPGKAVGSHLRAHYERVLYPYNLF
QSGANLLAPEVAAKLMSFGAAPEQEKFFQKPSLPESGDDKEYKPHDLVQRQKVQVQPGDT
CAPARRAKRMKAESDCGKSEGCAGGDASENRPNLRRRMGSFVVKPEPVKEIPIQIKQEPV
ERELQAEPEKTKSRYKKIAPQPPVSVVDQYVCLVCGSGSDEDRLLLCDGCDDSYHTFCLI
PPLHDVPKGDWRCPKCLAQYVSVQECCKPQQAFGFEQARREYSLKTFGEMADSFKSDYFN
MPVHMVPTELVEKEFWRLVGTITEDVTVEYGADIASKEFGSGFPIRGGKFKVAPQDEKYL
SCGWNLNNMAMMAPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGE
PKTWYGAPGFAAEQLEEVMKKLAPELFESQPDLLHQLVTIMNPNTLMAHGVPIYRTNQCA
GEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWIPLGRQCVQHYRLLHRYCVFSHDEMICN
MASKAEKLDVVLASAVHKDIVLMINEEKELREKIRKLGVVQCELFEYDLLQDDERQCCKC
RTTCYLSALTCTCQPGEQVCLHHAEQLCSCPASKYTFRYRFTLDDLLPMMNAVKQRAQLY
DEWASHVTEVLEAKLDKKRNLSVFHSLLEESDKNNFPDNDLLRHLRVVTQDADRCSAVAQ
QLLNGKRQTRYRAGGGKTQNQLTVEEMRSFVRQLYSLPCSLMQAPLLKELMNRIEDFQAH
SEKVLSDTVSADSVMEIQALLDESSEFDVYLSEVPRLREHLEIARWLEAVHLAEESGNSA
RGLTLDAMRQLIDRAVGLTSDPAIERAMARLQELLTVSEQWEEKAHTLLKARPPESVESL
SAVLKEIEAVPTYMPNCLLLRDSVNRATEWLKEAEALQLGGRVPVLDTLSDLVLKARAIS
VQLEPLERLEGLVSEVQAWKESAAKTFLLKNSSFTLLEVLCPRCETGSSLKRKMKKKGDA
LSCGKKRTGRLDNLCDVEKALLESKDSASAMATLAEVRLKELESLASLRAANESKLLPAA
DCSTFKVCVCQKPPMGAMRQCELCRDAFHSVCVRGHGDHGESEPWLCPLCRRSVKPALDR
IVPLMASLQRIRVRLPEGDALRYMIERTVDWQRRAREVISSYNFPTAAQENQGQQCAGDS
SAKGQDWNKYNQEQSVFYIEQRCIPLQCLSTELEELMVEGLLLQVSLPETQQLYMLLLKG
PPAQCSPGHTHPATDSPQHTSYSTQEHTSSHKEKDLVTPAEKKAKRRMEREEMGLKIDVR
ERGIPKRKKQRMRSEKRKAASVSASPNYPSDLSQSDDSEEDMILCPAESCLQPAGDEVFW
VQCDCCNQWFHMICVGVSEKVAAEEDYMCVTCSAR
NT seq 4608 nt   +upstreamnt  +downstreamnt
atgatgacacttttgattcgtttttctcccgttgctaatttattgtatagtctgtttaca
tgtaagtgcgcgcgcgcgcgcgcacacacacacacacacacacacactcctgtattgaaa
agggccacatggcgagctgcattaccgcatcactgtgacattgaatttggcctcaaggat
gatacttttgactggcagcctccatttgcatgtgacgtcgacagacttcatttcactcct
cggatccagcgtctcaatgagttagaggcacagacgagggtcaaactaaattttctggat
cagattgctaagttctgggagcttcagggatgtactcttaaaattccacatgtagagcga
aagatactagatctataccacctaaacaagctggtttcagatgagggaggttttgatgcc
gtatgtaaggatcgcaaatggacaaagatagccatgacaatgggctttgtgcctggcaaa
gcagttggctcacatctccgtgctcactacgaaagagtcctctacccctacaacctcttc
cagtctggggccaacctgctggccccagaggtagcagccaaactgatgagtttcggggct
gctcctgagcaggagaagttttttcagaagccctccctcccggaaagtggtgatgataaa
gaatataaacctcacgatctggtacagaggcaaaaagtgcaggtgcaacccggtgataca
tgcgcacctgccaggagagccaagcggatgaaagcagagtctgactgtgggaagtcagag
gggtgtgcaggaggagatgcgagtgagaacaggcccaatctcaggagacgcatgggctct
tttgtggtaaaacctgaaccagtgaaggaaatacccattcaaattaaacaggagcctgtg
gagagagaactgcaagctgagccggagaaaactaaatcgcgctataagaaaatcgctcca
caaccacctgtcagtgtagtggaccagtatgtgtgtttggtatgtgggagtgggagtgat
gaggataggctgttgctatgtgatggctgtgatgacagctaccacacattctgtttgatc
ccgccccttcatgatgtccctaagggtgactggaggtgccccaagtgtctggcgcagtat
gtttctgtacaggaatgctgtaaacctcagcaggcatttgggttcgaacaggcacgtaga
gaatactccctcaaaacgtttggagaaatggctgactcattcaaatctgactacttcaac
atgcctgtccatatggtacccactgagctggtagagaaagagttctggcgattagtgggc
acgatcacagaggatgtgactgtagagtatggagctgatatcgcttccaaggagttcggc
agcggctttccaatcaggggcggcaagttcaaggttgcaccacaagacgagaagtacttg
agttgtgggtggaatctgaataacatggcaatgatggctccatctgtgttgacgcatgtg
acagctgatatatgtggcatgaccctgccctggctgtatgtgggaatgtgcttctcctct
ttctgctggcatattgaggaccattggagctactccattaactacctgcattggggagag
cctaagacatggtatggtgctccaggatttgctgcggagcagttggaggaagtgatgaag
aagctggcacctgagctatttgaatctcagccagatctcttacaccagcttgttaccatc
atgaaccctaacacgcttatggctcatggagtaccaatttacaggaccaatcagtgtgca
ggagagtttgtcatcacattcccgagagcctatcacagtggttttaatcagggcttcaac
tttgcagaggctgtgaacttctgcactgtggactggatacctttgggccgtcagtgtgtt
cagcactaccgcttgttgcatcgttactgcgtgttctcgcacgacgagatgatatgtaac
atggcttccaaagctgagaaactggatgtggttctggcatcagccgtgcacaaagacata
gtgctaatgatcaatgaagagaaggaactccgagagaaaattcgcaaattgggagtggtg
cagtgtgagttgtttgaatatgatttgctacaggatgatgagaggcagtgttgtaagtgt
cgcaccacctgctacttatctgctctcacctgtacatgtcagccaggtgagcaggtgtgt
ctacaccatgccgagcagctctgctcctgccctgcctccaaatacacattcaggtaccgc
ttcacactggatgacctcctccccatgatgaatgctgtgaagcaaagggctcagttgtat
gacgagtgggcgtcacatgtaactgaggtccttgaggccaaactggacaaaaagcgcaac
ctgtctgtgttccattccctgcttgaggagtcagataagaacaattttccggataatgat
ctgttacgtcacctgagagtggtcactcaggatgcagacagatgctcggctgtggcacag
cagcttctcaatggcaagagacagacaaggtatcgtgctgggggaggaaaaactcagaac
cagttgactgtagaggaaatgaggtcatttgtgcgtcagctctacagccttccctgcagc
ctaatgcaagcaccattattgaaggagctgatgaaccgtattgaggatttccaggcacac
agtgagaaagttctgtctgatactgtgagtgcagattctgtaatggagattcaggccctt
ctagatgagagctcagagtttgacgtgtatttgtcggaggttcctcggctacgggagcat
ctagagattgctcgttggttagaagcagtgcatttggctgaggagtcaggcaacagtgcg
cgtggcctcactctggatgctatgcggcagctgattgaccgcgctgtggggttaacctct
gatcctgcgatagagcgtgctatggctcgtctgcaggagctgctcacagtgtctgagcag
tgggaggagaaagcacacacactgctcaaagccagacctccagagagtgtggaatctctg
tctgcggttttgaaagagattgaggctgtacctacatacatgcccaactgtctgttgctg
cgagactctgttaacagagctacagagtggctgaaggaggctgaggctctgcagttggga
gggcgtgtccctgtgttagacacactgtcagacttggtgctgaaggcccgggcgatttct
gtacagctggagccactggagcgactggaggggcttgtctctgaggtgcaggcatggaag
gagtctgcagccaaaacctttctcctcaaaaactcctctttcaccctgttagaggtgttg
tgtccacggtgtgagacaggaagctcactcaaaagaaagatgaagaaaaagggagatgca
ttgtcgtgtgggaaaaagagaacaggaagactggacaatctctgtgatgtagagaaagct
cttttagagagtaaagactcagcttctgcaatggcgacacttgctgaagtccgtttgaag
gagctggagtccttggcgtctcttcgtgcagctaacgagtctaaactcctcccagcagct
gactgcagcacattcaaagtgtgtgtgtgtcagaagcctcccatgggtgccatgcgtcaa
tgcgagctgtgtcgtgatgccttccacagtgtgtgtgtacgtggacatggggaccatggt
gagtctgaaccatggttgtgtcctttgtgtcggcgttcagtgaaaccggctttagacagg
attgtgccactgatggcatctctgcagaggattcgtgtgcgtttaccagagggagatgct
ctgcgttacatgattgaacgcacagtggactggcagaggcgagcacgggaggtcatttcc
tcatataattttccaacggccgctcaggagaaccagggacagcaatgtgcaggggacagc
agtgcaaagggtcaggactggaacaagtacaatcaggagcagtctgtcttttacatagag
cagcgttgcatccctctgcagtgtctgagtacagagctggaggagctaatggtagaagga
ttactgctgcaggtgtcactgcctgagactcagcagctgtatatgctactactaaaaggc
cctccggcccagtgcagtccagggcatacacacccggcaaccgacagcccacaacacaca
tcctactcaactcaggaacacacttcatcacacaaagagaaggacttagtgaccccagca
gaaaagaaagcaaagaggcggatggagagagaagagatggggctgaagattgacgtgagg
gagcgagggatcccgaaacgaaagaagcagcgaatgagaagtgagaagagaaaagcagca
tctgtctctgcgtcacctaattacccgtccgatctatcccaatcggatgactcagaggag
gacatgatcctctgtccagctgagagctgccttcagcctgcaggagacgaggtgttctgg
gtgcagtgtgactgctgtaaccagtggtttcacatgatctgtgtaggcgtttctgaaaag
gtagcagccgaggaggactacatgtgtgtcacctgcagtgcacgttaa

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