Tachysurus fulvidraco (yellow catfish): 113656269
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Entry
113656269 CDS
T08119
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tfd04131
]
113656269 (vps13a)
Membrane trafficking [BR:
tfd04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
113656269 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
113656269
NCBI-ProteinID:
XP_027023259
LinkDB
All DBs
Position
14:22366332..22410671
Genome browser
AA seq
3211 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVGNLDSSQLKLGIWGGDAILRNLEIKENALSQLDIPFKVKAG
HIGRLELKIPWKNLYTQSVEATLDEVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEKENPNTEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDSITNPNSPLSFGVSLQ
NLSLQTSDANWKPCLLDETAKLFFKLVRLDNLFAYWNVNSELYSIHSASEALRYLQQNVA
VQNSIPHDYQFIFRPISANAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMSRNLPYRKYRPDMPVHNNAYQWWRYVIKGILEVNVKPSLHMWSWKHIKCHRE
QIKQCKELYKTKITSKKPAETLLKKLEETEKCLDIFNITLARQQAEMEASKAGLRIYRPG
LKMEEEQSQGWFGWMWNWSGDSSAPTKEIKPGGFDTLMTSAEKAKLYTAIGYSETAVNPN
LPKNFEDMKVRFQLVSMSVSIKESKEKPEIIKLSVIDLRTMLTQRSSAQAIMITAQLSSF
EVTGVSRNGIAPTLLSPRRAVEEDKPLLSLMFETNPLDAKADQRLHVESQPLEIIYDAMT
VNNMSAFFMPPNDLELDELTNATRMKLEQFRDRTSTGLMYIIETQKVLDLKINLMASYVI
VPQMGFYDPKHNLIILDLGHFQMSSKSRANLPQLSVGKNTIEDIMSRAYDSFDVQLTSLQ
LLYSKPDEDWQKARKLRQSSLHILEPVDLKVVFSRAMVVTDSRMPKFKIFGELRLLSLRI
SDDKVRGILELIDSIPLPESRPSPRTAALQTTPKVVKPRDTPQLTPRKPAMVDLRSSIIF
DSGSEEDLFFDAPSSPIEDLPFFEASAGSLERSTSVKRKAMVKHDPKKNMTEFLLNFEIN
MLSVQLCRLLEGSEAPVLRLEIEGLGTELKVRTFDMSSNTFLREICLECSEYKDGEDKKV
HLITTLDNTEDDLLTLEYIKADKNAPDFKSLYNNTEQLIKVNFSSLDVHLHTEALLNSMN
FLNSLLPPTKKEEPVEQPAPQQDDDGEGDSEEEKKEESTIAKKSSTKKSKFEDVVNLHIR
ADLSCLKVFIRGEKARISEISIEGLVSEVQMKKKSVEILANLKNIVILDCDKDALYKKAV
SVADKDVFVFHMVNYVDATDGDAYTDMQIVDSSVTLTVGCIQVIFLNKFVSSILAFINNF
QEAKDALAEVTVQAAEKAATGVLELAEKCTRISLNVNIKAPVVFLPQSSVSTDVIVADLG
LVTVKNVFEIVPSKTHTKIPPILDIMTVALSELKMYRTTFKDGKFQSEIQLLKPVNMDLS
IKRNLSASWYYSIPDNQINAHLKPMTLILSQEDLTVVLRTLTDNLSETSDAGPAPKSPDK
AETASGKDSQESGGNTVVTAAVVEGQKAAKLKSTLKLHFKFDSMTLVLYSSSGSEIALLD
SHDEQLKLAEFTLGTISTSVHMFSDSSMKASVKLTECLLDDKRKRVNMITSRMMAMRKGA
EKNVMVEVNYRQGRDGTTLDTVVQDLYLCASMEFLLTVVDVFLKSMDQGFSKQPKSSKPA
STSTKDAAAPPQPVVAKTEMNVMVRNPEIVFVADLSRADAPALVMTMQCELVMKSDAANQ
QMTAAVTDLKVVACPFVCGEDESNVTTVLQPCQVFFKQTQTPTQPQTIQLSMNSLTLKVS
PIIINTVITIQSALTPAAETPEELESPVPPELWERRDCRDPKFWFLEEEGEEDVQSLAPL
IPKGESLELSIVSICLTLEAGVGHRTVPMLLAKSSFYGDVKNWSTLINLQCHLNMEVNYY
NEILGVWEPLLEPLEDETKDGFRPWTLELKMKKKPVKPSVVSDEVDYIVPDYKTVISINS
KDQLNITLSKCGLNMLSNLGTAFAEAAKQTADRFQKDQAPFVVKNQLGLPVSVLYSEVFK
PIRKKSKERVVELQDGESLNMDYTLTDAEPDQFSAMTSLSSKKNYIQPTPVGHTSASIIP
LIKVGRGMYSVVHLDSGVTRFFVCQIYSNEGSKFVKIRSPFLIINHFSLPFRVFEGSTCL
GLSSPTEEFCVPLGSYRSELTLQPVTEGDEQYERSESFSYQNLSQKANECVEKTCHHHSD
AACIFKVNMVSVQDSVMSHSTQEEYDQPYVLHLWPTVLLRNLLPYEITYSLMGSGNTAPT
SLKEGHSSQLHTAVMDHTSLELKVLGYLQQDWEANYQLRSDQDEISFITFHSHCLDEGVD
GEGVKAELDIAVHVKKEVGQVVVAIHSPYWMVNKTGRLLQYKADDIHRKHPKDYDMPLLF
SFKPRNFLQNNKVRLMISGSELSDEFSIDTVGSYGDVKCKGRDKDYLVGVKIDTSSFSLT
RLVTFLPFYMLVNKTKHVIRVCEEGQDDWTEAKPGETATPFWPERDSKKLSVKVDGCKST
AQVIAFHKPENCLLLHLDNTLGGIIVDVNLTEHSAVIRFSDYHAGAAPFLIINHTKENKL
EFHQSSHKLETDELGPGQAVYYTWAEPTGSRVLCWSWGPYSGELKSEEDLMKDMNNEGKL
YVISFYEGLQRVALFTTERRVYKLLCESEKVELAEQEISLSLQDMGISLVNNSTSQEVAY
IGIKSSDVVWETKPKKKSRWKVMSGKEAEMLEQRYRDYTERNPVDHSIIDLENGYQLSLT
PNGLDMRMLQPYDAPLRRNFLPALKVEYSVSARQKAYRVQINRIQIQNQLPGAIFPFVFY
PIKPPKSVRMDSEAKPFIDLSLITRAAGHSDILRIKYFKVLIQEMDLRLDLGFLYAILDL
FTAENAATVTSEQEVELFEKDIEYLKTGLNHVSSTDTSPISLYEYFHISPIKLHLSFSLS
SAGEDGNKEKRETEMIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFRTTQQLQWE
VIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFMEGVA
LGMKALVGGAVGGLAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLKEGLTRG
GKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGFGKGLVGAVTRPTGGIIDMASSTFQG
IKRAAETSQDVESLRPPRFIHEDGVIRPYREREGIGSQMLQKIENGRFAKYRYFAHAKVN
ESDFLMITKRGIFFVTRGTFGQLTCEWQYLFDEFTKDPMIVEDRRLRIEAKERVKSVFHA
KEFGKIINFKTPEIAKWVLTKLQDARDSLQK
NT seq
9636 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtggtggacgtcctgaacaggttcctgggggactatgtgggg
aacctcgacagctcccaactcaagctgggcatctggggaggtgatgccattctgcggaat
ctggaaataaaggaaaatgccttgagtcagctggacattccttttaaagtcaaagcagga
catataggtcgcctggagctgaagatcccctggaagaacttgtacacgcagtcggtggag
gccacgctggatgaggtctacttgctcatcgtccccacggccagtataaagtatgatgca
gaaaaggaggagaagcagctgcaggaggctcgacagagggagcttcagaggatcgaggaa
accaaactgaaagctgcagagaaagaaaatcccaatacggaaaagcaagacactttcgta
gagaaattggtcacgcaggtgattaaaaacctgcaggtgaaaatttccaatattcacgtt
cgctacgaagatagtatcaccaatccgaattcgcctctctcgtttggagtgtctctacaa
aaccttagtcttcagacatcagacgcaaactggaaaccctgcctgttggatgagacagcc
aagctgtttttcaagctcgtccgtctggataatctcttcgcctattggaacgtgaactca
gaactttactcgattcactctgctagtgaagccctgcggtacctgcagcaaaatgtggct
gtccagaactccatccctcatgactatcagtttattttccgtccgatatcggccaacgct
aagcttcgtatgaaccctcgctcggatgtggacttctcctcgccgaaggtggatcttgtg
gtcaacctgcctgaagtggctgtggagctcagcaggccacagtatgtcagcattctggag
ctattgggctctgtggatatgatgtcacgtaatcttccatacaggaagtatcgcccagat
atgcctgtccacaacaatgcataccaatggtggcgttatgtcatcaagggcatcttggag
gtgaacgtaaaaccttccctgcacatgtggtcatggaagcacatcaaatgccatcgggaa
caaataaaacagtgcaaagagctttataagaccaagatcaccagcaagaagcctgcagag
accctgctgaagaaactggaggagacagaaaaatgcctggatatttttaacatcacactc
gcgagacaacaagccgagatggaggcttctaaagctggcctgaggatctatcgacctggg
ttaaagatggaggaggagcagtcacagggatggttcggctggatgtggaactggtctggg
gacagctctgctccgaccaaagagatcaaacctggagggtttgatacactgatgacttca
gcggagaaagccaaactctacactgccattggatacagcgagacggctgtaaatcctaat
ctgccaaaaaattttgaagacatgaaggttcggttccagttggtgagcatgtccgtgtcc
attaaagagagcaaagaaaagccagagattatcaaactgtccgtcatcgacctgagaacc
atgctgacacagagatcctccgctcaggctataatgatcacggctcagttgtcctcattt
gaagtaaccggtgtatcgagaaatggcatcgctcccacgctgctttcccctcgacgtgcg
gtggaggaagacaagcctctgctcagcctgatgttcgagaccaacccactggatgccaag
gcagatcagagactgcatgtggaatcgcagcctctggagatcatctatgatgcaatgaca
gtgaataacatgtcagcgttcttcatgcctccgaacgacctggagctggacgaactgact
aacgctacccgcatgaagctggagcagttcagagacagaacctcaaccggactcatgtac
atcatcgagacacagaaagttcttgacctgaagatcaacctgatggcctcctatgtgatc
gtgccccaaatgggcttctacgaccccaagcacaaccttatcattctggatcttggacac
tttcagatgtcgagtaagagcagggccaatttgccacagctctcggtgggaaagaacacc
atcgaggacatcatgtctcgagcctatgacagctttgacgtccaactcaccagcctgcag
ttgttatattccaaaccagatgaagactggcagaaggctcggaagctcagacagtcttcc
cttcatattctggagcctgttgacttgaaggtggttttcagcagagcaatggtggtcact
gactcaaggatgccaaagtttaagatatttggcgagcttcgtctgctctcccttcgcatc
tccgacgacaaagtccgtggcatccttgagctaatcgacagcattccactgcctgagagt
cggccctcccctcggactgccgctctgcaaactacgcccaaggttgtcaaaccgagagac
acccctcagctgacccccagaaaaccagctatggttgatctgcgctcctcaataatattt
gactctggatcggaggaggatttgttcttcgatgcacccagttcaccaattgaggacctg
ccattcttcgaagccagcgctggctccctagagagatcgacctctgtaaagaggaaggcg
atggtgaaacatgaccccaaaaagaacatgacagaatttctgctgaattttgagataaac
atgttgtccgtccagttgtgccgccttttagaaggctctgaagctccggtcctgcgtctg
gaaatcgagggtctgggcacagagctgaaagtgcgcacgtttgatatgtcctccaacaca
tttctgcgggaaatctgcctggagtgctcagagtacaaggatggagaagataaaaaggtt
cacctcatcaccacactggataacacggaggacgacctgctcacgctggagtacattaag
gcggacaagaacgcaccagattttaaatcgctgtataacaacacagagcaacttatcaag
gttaacttctcctccttggacgtgcacctccacactgaagccctgctcaactctatgaac
ttcctgaacagcctccttcctcctaccaagaaggaggaacctgttgagcagcctgcaccc
caacaggatgatgacggagaaggagacagcgaggaggagaagaaagaggagtccacaatt
gccaagaaatcctctacaaagaagtcaaagtttgaagatgtggttaatttgcacatcaga
gcagatttgtcctgtctgaaggtcttcatcagaggagagaaagccagaatctctgagatc
agtatagaaggtctggtatctgaagtacagatgaaaaagaaatcagtcgagatcctggct
aacctgaagaatattgtcatattggactgtgacaaagatgctctgtacaaaaaggcggtg
tctgtagcggataaggacgtgttcgttttccacatggtgaattacgtggacgccacagac
ggagacgcctacacagatatgcagatagtggactctagtgtcactctgactgtgggctgt
atccaggtcatcttcctcaacaagtttgtctcctcaatactggccttcatcaataacttc
caggaagctaaagacgctctagcggaggtcacagtgcaggcggcagagaaagcggccacg
ggcgtgttggagctcgctgagaaatgcactcgcatttcactgaacgtgaacatcaaagca
cctgtcgttttcctcccacaatcctccgtttctactgacgtcattgtcgccgatttgggt
ttggtgaccgtcaagaacgtctttgagatcgtgccctctaaaacacacactaagattcct
cccatcctcgacatcatgaccgtggctctgagtgagctgaagatgtacagaactacattt
aaggatggcaagttccagagcgagatccagttgctaaagcctgtaaatatggatctgtca
atcaagcgcaatctctctgcctcctggtattacagcatccctgacaaccagatcaacgca
cacctcaaacccatgactctaatcctgagtcaggaggacctcactgtggttttgcgaact
ctcactgacaacctgtccgagacctctgatgcaggtcctgcacctaaaagtcctgataag
gcggagaccgcgtctggcaaagattcccaggaatctggagggaacacagtggtaacagca
gcagtcgtggaaggacagaaggccgccaaactgaaaagcactctaaaactccacttcaag
tttgattcaatgactctggtcctctacagctcaagtggaagtgagattgcgttgctggac
tctcatgacgaacagctgaagctggcggagttcaccctgggcaccatctccacttcagtt
cacatgttctccgacagctccatgaaggcctctgttaaactcaccgaatgcctgctggat
gataagagaaagagggtcaacatgatcacttccaggatgatggcaatgcgaaagggtgct
gagaagaatgtcatggtggaggtgaactatcgccaaggccgggatggcaccaccctcgac
actgtagtccaggatctttacctctgcgccagcatggagttcctgctcacggtggttgat
gtctttctgaaatctatggatcagggtttctccaagcaacctaagagcagcaaaccagca
tctacctccaccaaagacgccgcagctcctcctcagcccgtagtggcaaaaacagagatg
aacgtgatggtgaggaaccccgagatcgtgtttgtggccgacctgagccgtgccgatgcc
ccggcccttgtaatgaccatgcagtgtgagctggtgatgaaaagtgacgctgccaatcag
caaatgacggccgccgtcactgacctgaaggtggtagcatgcccgtttgtgtgtggtgaa
gacgagagcaacgtcaccacagtgctgcaaccatgccaggtgttcttcaaacaaacacag
acacctactcagcctcaaaccatacagctgtccatgaactccctcaccttgaaggtgtca
cccatcattataaacacggtcatcactatccagtcagcgctgacccctgcagctgagacc
cccgaggagttggagagccccgtgcctcccgaactgtgggagcgcagggactgccgggac
cccaaattctggtttctggaggaagagggagaggaagatgttcagtccttggccccgctt
atccccaagggcgagtcactcgagcttagtattgtctccatttgcttgaccctagaggca
ggtgtgggtcatcgcaccgtccccatgctgcttgccaaatcctctttttacggagatgtg
aagaactggagcactctgatcaacctgcagtgtcaccttaacatggaggttaattattat
aacgagattttgggtgtgtgggaaccacttttggagccacttgaagacgaaaccaaagat
ggtttcagaccatggacactggaactaaagatgaagaaaaagccagtgaaaccttccgtc
gtttccgacgaggtggactacattgtgccggattacaaaaccgtaatcagcatcaatagc
aaagaccagctaaacattactctctccaaatgtggactgaacatgctcagtaatttggga
acggcatttgccgaagccgccaagcagacagcggaccgtttccagaaagaccaggctccg
tttgtggtgaagaaccagttaggtttaccggtgtctgttctttacagcgaagtgtttaaa
cctatcaggaagaaatctaaagagcgcgtggtggagctgcaggatggcgagagcttaaac
atggactacacactaactgatgcagaacctgatcagttctcggctatgaccagcctaagc
agcaaaaaaaactacatccagcccactcctgtcggccacacctcagccagcatcatcccg
ctgatcaaagtcggccgtggtatgtacagcgtcgtgcacctggattctggagtcacacgc
ttctttgtctgtcagatttactccaatgagggcagcaagtttgtcaagatccggtcacct
tttctgatcattaatcacttttcgctgccgttccgggtgtttgagggatcaacgtgtcta
ggcctatcttcacccactgaggagttctgtgtccctctcggctcttacagatctgagctt
accctacagcccgtaacggagggagacgagcagtacgagcgctctgagagcttcagctac
caaaacctcagtcagaaagctaacgaatgtgtggagaagacgtgccatcaccatagcgac
gccgcttgcattttcaaggtcaacatggtatccgttcaagactccgtgatgtcccacagc
actcaggaggaatacgaccaaccgtacgtcctccatctgtggcctaccgtgcttctccga
aaccttcttccctacgagatcacctacagcttaatgggaagcggaaacacagccccaaca
tcgttgaaggaaggccactcgtcccaacttcacacagccgtcatggaccacacaagtctg
gagctgaaagtcctcggctacctgcaacaagactgggaggcaaactaccagctccgctcc
gaccaggacgagatcagtttcatcacatttcactcacactgtttggacgagggggtagac
ggggagggcgtgaaggcggagctcgatatcgctgttcacgtgaagaaggaggtgggtcaa
gttgttgtagccatccattctccttattggatggtgaacaagaccggaaggctgctgcag
tataaagccgacgacatccatcgcaagcatcccaaagattacgacatgcctctgctgttc
tcttttaaaccacgtaactttctgcagaacaacaaggtccgcttgatgatttcaggcagc
gagctgtcggacgagttctcgatagacacagtcggtagttacggtgacgttaaatgtaaa
ggaagggacaaagattatctagtgggggtgaagatcgacacgagcagtttcagtctgaca
cgcctggtgacgttcttacccttctacatgcttgtgaacaaaacaaagcacgtaatccga
gtgtgcgaagaggggcaggatgactggactgaggcaaaacctggagagaccgccactcca
ttctggccagagagagattcaaagaagctcagcgtgaaggtggacggttgcaagtcgacc
gctcaagtcatcgccttccataagcccgagaactgcctcctgctgcacctcgacaacacg
ctgggtggtatcatcgttgacgtgaacctgacggagcattcggctgtgatccggttctct
gattatcacgccggagcagctccttttcttatcatcaaccacaccaaggaaaacaaactg
gagttccatcagagctctcataagctggagacggacgagctcggccccggtcaggccgtg
tactacacatgggccgagcccacaggatctcgagttctctgttggagctggggaccctac
agtggtgagctgaagagcgaggaggaccttatgaaggacatgaataacgagggaaagctg
tacgtcatctcgttttacgaaggccttcagcgggtggcgttgttcaccacggagcgtcgt
gtctacaagctactatgtgagagcgagaaggtggagctcgctgaacaggaaattagcctc
tcgctgcaggatatgggcatctcattggtcaacaacagcaccagccaggaagtggcctac
atcggtatcaaaagctctgacgtggtgtgggagaccaagccgaagaagaagagccgctgg
aaggttatgagcgggaaagaagctgagatgttggagcagcgctacagagattatacagag
agaaacccagtggatcacagcatcatagacctggagaacggctaccagttgagtttgact
cctaacggattagacatgaggatgttgcagccttacgatgcacctctgcgaaggaacttt
cttccagctctgaaggttgagtacagcgtctcagccagacagaaagcgtatcgcgtgcaa
atcaacaggattcagatccaaaatcagcttcctggagccattttcccatttgtgttctac
cctatcaaacctcccaaatcagtcaggatggactcagaggcaaaaccgttcattgacctc
agcctcatcacgagagcagcaggtcactcggacatcctacgcatcaagtattttaaggtg
ttgattcaggaaatggacctacgtttggacttaggcttcctgtacgccattttggatctg
ttcactgcagagaacgctgccaccgtcacctcagaacaagaggtggagctgtttgagaag
gacatcgagtatttaaagacaggattgaaccacgtgtcctccacagacacatcccccatc
agcctttacgaatacttccacatctctcccattaagctccatctgagcttctctctgagt
tcggccggtgaggacgggaacaaggagaagagagagactgagatgattcctgtgcagtct
cttaacctgctgctgaagagcataggagcgacactgactgacgtgcaggacgtcgtcttc
aaactggctttctttgagctgacattccagttccgcaccacacagcagcttcagtgggag
gtcatccgacattactccaaacaggcaatcaaacaaatgtatgtactggtgctggggtta
gacgtccttggtaacccatttggtctgatccggggtttgtcagagggagtcgaggctttc
ttttatgagccgtatcagggagcaattcagggacctgaggagttcatggagggtgtggct
ttgggtatgaaggctctagttggaggtgcagtagggggtttagccggagcggcatctcgc
atcacgggtgccatggctaaaggcgtggctgccatgacgatggatgaggagtatcagcag
aaaaggagagaggccatgaacaagcaaccgagcggcttgaaagagggtctcacaagagga
gggaaaggactcgtctctggctttgtgagtggtattacaggcatcgttactaaacctatc
aaaggtgcacagaaggagggagcagcaggtttctttaaaggttttggtaaaggtcttgta
ggagctgtgactcgaccaacagggggcatcattgacatggcgagcagcaccttccagggc
atcaagagagcggctgaaacgtctcaggatgtggagagtttgcgacccccacgtttcatt
cacgaggacggcgtcatcagaccgtatagagagagagagggcatcggcagccagatgtta
cagaaaattgaaaatggacgctttgcgaagtacagatactttgctcatgccaaggtgaac
gagtctgatttcttgatgatcaccaaaaggggcatattttttgttactagaggcactttt
gggcagttgacatgcgagtggcagtatctatttgatgagttcaccaaagatcccatgatt
gttgaggacagacgactgcgcatagaggcaaaggaacgggtgaagtctgtgtttcatgcc
aaagagtttgggaagatcatcaacttcaagactccagaaatagccaagtgggttctgacc
aagcttcaggatgccagggacagcctacagaaataa
DBGET
integrated database retrieval system
