Tachysurus fulvidraco (yellow catfish): 113656541
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Entry
113656541 CDS
T08119
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tfd03036
]
113656541 (chd5)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113656541 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
Chromo_MIT1
AAA_22
Motif
Other DBs
NCBI-GeneID:
113656541
NCBI-ProteinID:
XP_027023636
LinkDB
All DBs
Position
2:4178002..4225909
Genome browser
AA seq
1988 aa
AA seq
DB search
MPGSLSNEEEGQDDLDFEDDVPDEDEETEHVRVPLSPLERFFSEDESLKQKKKKPSKQKE
GRMPKVKKKTKEGGSSEHEDVTDREDQCSGSESSTYGMLKKKKKKPREKKEKKGKWKKRE
DDEDDDDDDGNMKEPKSSSQLMEEWGLEDVQYAFSEDDYKTITNYKAFSQFLRPLIAKKN
PKIPMSKMMTVLGAKWREFSANNPFKGSSATAVAAAVAAAVETVNITPSISISSVQQLSP
TGQVKKAKTKEGKGPSARKKSKQPKDTKKKAKAKKPKLKAGQSSKRKKASSSEDDFLDDF
SDFDDISIHSASVRSDASGVPKKKTKRGRKKRKREDGDGYETDHQDYCEVCQQGGEIILC
DTCPRAYHLVCLEPELEKAPEGRWSCPHCEKEGIQWEAKDDDEEEEDAGGEEEDDHMEFC
RVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKILHWMWGD
PPLPPEPLSLQDGKKEDVLVKPPLKGRPERLLFVKWAGLSYWHCSWVNELQLELYHTVMY
RNYQRKNDMDEPPPFDYGSGEEELNNEKRKSKDPHYAAMEERFYRYGIKPEWLIIHRILN
HSFDKDGDVHYLIKWRDLPYDQCTWEIDDFDVPEYESFKQAYWDHREQMLGEDHRPLVVR
KGRRLKEEVKRREAPPETPVVDPTVKFEQQPWYIDATGGTLHPYQLEGLNWLRFSWAQGT
DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDFYVVT
YTGDKDSRAVIRENEFTFEDSAVKSGRKVFRMKKDTPVKFHVLLTSYELITIDQAILGSI
SWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFN
NLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY
YKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNLL
VKSSGKLTLLQKMLKKLKDNGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGGLR
QEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ
NKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEE
LFKDDVEAIGDSKDGEEGSVIHYDDNAISKLLDRSQDATEDTEIQNMNEYLSSFKVAQYV
VREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDT
SQEDQEWHDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPPLLARVG
GNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLKGKSEKEFRAYVSLFMRHLC
EPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPVGLEL
KKLTESLSSDPNTPVPASPAPTQPSTPVPSDKSESGPVPPEDKDSAEHESTKTAESETSK
ESESYPEKTHEREEQKIGSAEQKSNKESEKKDDSPSESEPSINQTQPVSKQNEQSTNQMA
LTTGQQSKDLEHTSEKTEKDASFVVKLEDKEPKQAAPHEPKSEDGAENQLNGEKETRDEL
DESQKDEKNGAKARFMFNIADGGFTELHTLWQNEERVAVSSGKMYDIWHRRHDYWLLAGI
VTHGYARWQDIQNDPRYAILNEPFKTEMNKGNYLEMKNKFLARRFKLLEQALVIEEQLRR
AAYLNMTQDTTHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELL
SDMKADVTRLPSMLSRIPPVSARLHMSERSILSRLTNREPQPQQPFPQGSFACSSMYNNS
FGGGFRGPAGAAMVNYSQMPLGPYVSVSSNGPPAPSSHMDKKSSEVLRDVSPPDLKSSKP
SDVICIED
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcactgagcaacgaggaagagggccaagacgatttggattttgaagacgac
gtgccagacgaggatgaggagaccgaacacgtccgcgtgccgctctcgcctctggagcga
ttcttctcggaagacgagtcgctcaagcagaagaagaagaaacccagcaagcagaaggag
ggcaggatgcccaaagtgaaaaagaagacgaaggagggtggctcgagcgagcacgaggat
gtgacggacagggaggaccagtgctccgggagcgagagcagcacctacggcatgctgaag
aagaaaaagaagaagcccagggaaaagaaggagaagaagggaaaatggaagaagagggag
gacgacgaagacgacgacgacgacgacggaaatatgaaggaacccaaatcttcgagtcag
ctgatggaggagtggggtctcgaggacgtccagtacgccttctccgaggacgattacaaa
accatcaccaactacaaggccttcagccagttcctcaggcctctcatcgccaagaaaaac
cccaaaatcccaatgtccaagatgatgacggtgttaggcgctaaatggcgtgagttcagc
gccaacaacccgtttaaaggcagttcggcgacggccgtagcagctgcggtggcggccgca
gtggaaacggtcaacatcacgccatcgatctccatcagcagcgtccaacagctctctcca
acagggcaggtcaaaaaagccaaaaccaaagagggcaaggggccgagtgcaaggaagaag
agcaagcagccaaaggacacgaaaaagaaagcaaaagccaagaagcccaaattgaaagca
ggacagagcagcaagaggaaaaaagcatcttcgagcgaggacgatttcttagacgacttc
tctgactttgatgacatcagcatccacagtgcctccgttcgctccgacgcctcgggggtg
cccaagaagaaaacgaagcggggacgcaaaaagagaaaaagagaggacggagacggctac
gagacggaccatcaggactactgtgaggtgtgtcaacagggcggtgagatcattctgtgt
gacacctgcccccgggcctatcacctcgtgtgtctcgagccagagctggagaaggccccc
gagggcagatggagctgccctcactgcgagaaggagggaattcagtgggaagcgaaggat
gatgacgaggaggaagaggacgctggaggagaggaagaagacgaccacatggagttctgt
cgagtgtgtaaagacggaggagagctgctgtgctgtgacacgtgcccttcctcctaccac
atccattgcctgaacccgcctctgcccgagatccccaacggagagtggctctgcccgcgg
tgcatgtgccctcctcttaaagggaaagttcagaagattctacactggatgtggggggac
ccacctttaccccccgagcctctctcccttcaggacggtaaaaaagaagacgtcctggtc
aaacctccgctaaagggacgtcctgagagactgctgtttgtgaagtgggcaggtctgtcg
tactggcactgctcctgggtcaacgagctacagctggagctctatcacacggtcatgtac
aggaattatcagcggaagaacgacatggacgagcctccgccctttgactacggctcgggt
gaagaggagctcaacaacgagaagcggaaaagcaaagacccgcattacgccgctatggag
gagcgtttctatcgctatggcatcaaacccgaatggctaatcatccaccggatcctcaac
cacagttttgacaaagacggagacgttcactacctgatcaagtggagagatctaccgtac
gaccagtgcacctgggagatcgacgacttcgacgtccctgaatatgaaagctttaaacag
gcctactgggaccaccgggagcaaatgctgggtgaagaccatcgtcccctagtggtgaga
aaaggaaggcgactgaaagaggaagtgaagaggagagaagctccgcctgagactccagtt
gtggatcccactgttaagtttgagcagcagccatggtacatcgatgccacaggaggaact
ctgcacccgtaccagctggagggtttaaactggctacgtttctcttgggctcagggaacc
gacaccatcctggccgatgagatgggactgggcaagacagtgcagacaatagtgttcctg
tactcgctctacaaagagggtcattctaaaggcccgttcctggtcagcgctccgttgtct
accatcatcaactgggagcgagaatttgagatgtgggctccggatttttacgtggtgacg
tacacgggcgataaagacagcagggctgtgatccgggagaacgagttcacgtttgaggac
agcgctgttaaatcaggacgcaaagttttccgcatgaagaaagacacacctgtgaagttc
cacgtgttgttgacctcatacgaattgatcaccatcgatcaggctattctgggctccatc
tcttgggcgtgtttggtcgtggatgaagctcatagactgaaaaataaccagtctaagttt
ttcagaattctgaatggttataagatttactacaagctgctcctaaccggtacgcctcta
cagaataatctggaagagttattccatctgctgaacttcctcactcctgagcgttttaat
aatctggagggatttctcgaggagtttgctgacatttctaaggaagatcagattaagaag
ctgcatgatttgttggggcctcacatgctgcggaggctgaaggccgacgtcttcaagaac
atgccagcaaaaactgagctgattgtgcgtgtggagctcagcccaatgcagaagaaatac
tacaagttcatcttgactcgaaactttgaagcgctgaactctaaaggaggtggaaaccag
gtttctcttctcaacattatgatggacctgaaaaaatgctgcaaccacccgtacctcttc
cctgtggcggccgtggaagcccctgtgttaccgaacgggtcgtatgatgggaacctgctg
gtgaagtcctcagggaaactcactctgcttcagaaaatgctcaagaagctcaaagacaac
gggcatcgcgtccttatcttctcacagatgacgaagatgctggacctgttagaggacttc
ctggagtttgaaggctataaatatgagcgcattgatggcgggataactggaggactgcgg
caggaggccatcgatcgcttcaacgctcccggagcacagcagttttgtttcctgctctct
actcgtgctgggggattgggaatcaatctggcaaccgctgatactgtcatcatctacgac
tctgactggaacccacataatgacattcaggcgttcagccgggcgcatcgtattggacag
aataagaaagtaatgatctatcgctttgttacgcgggcgtcagtggaggagcggattacc
caagtagccaagcgcaagatgatgctcacacacctggtggtgcgtccaggcctgggctcc
aaaacaggctccatgtccaagcaggagctggacgacatcctgaagtttggcacagaggag
ctctttaaagacgacgtggaagccattggagacagtaaagacggagaggaaggcagcgtc
atccactacgatgacaatgccatctccaagctgttggaccgcagccaggacgccaccgag
gacaccgagatccagaacatgaacgagtacctcagctccttcaaggtggctcagtatgtg
gtgcgagaagaggacggagaggaggaggtgcagagggagatcattaaacaggaggagaat
gtggatcctgactactgggagaaactcctgcgccatcattacgagcagcagcaggaggat
ctggcacgcaatctgggcaagggcaagcgcatccgtaagcaggtcaactacaacgacacg
tctcaggaggatcaagaatggcacgacgatctttcagacaatcagtccgagtactcggtg
ggatctgaggatgaggatgaagattttgaggagagacctgaaggaggacggcgacagtct
cgcaggcagctgaagagcgaccgggacaaaccgctgcctccactgctagctagagtagga
ggaaacatagaggtacttggttttaatgcacgtcagagaaaggccttcctgaatgccatc
atgcgctggggtatgcctcctcaagacgccttcaactcccactggctggtccgagacctg
aaggggaaaagtgaaaaagagttcagagcatacgtgtcgctgttcatgagacacctgtgt
gagccgggagcggacggagccgagacgtttgcggacggcgttccgagagaaggactgtca
cggcaacacgtcctcacccggatcggtgtcatgtctcttgtgaggaaaaaggttcaggag
tttgagcatgtgaacggcaaatacagcactccagatttgattcctgtaggtctggagctg
aaaaagctcaccgagagtctctcttccgacccaaacaccccagtaccagccagtcccgcc
ccgactcagcccagcaccccagtaccatcagacaaatctgagagcggtcccgttcctcca
gaagataaagacagcgctgaacacgagagcacgaaaacagccgagtctgagacttccaaa
gaatccgagtcctatcccgaaaagacgcacgagagagaagaacagaaaatcggtagcgcc
gagcagaaatcaaacaaagagagcgagaagaaagacgattcgccctccgaatcggagccg
tcgatcaatcaaactcagccggtatccaagcagaatgagcagtccaccaatcagatggca
cttacgacaggacaacaaagtaaggacctggagcacacatcggagaaaacggaaaaagac
gcttcttttgtcgtcaagttggaggacaaagaaccaaaacaagcagctcctcatgagccc
aaatctgaggacggtgctgagaatcagctgaacggagagaaagaaacgagggacgagttg
gacgagagccagaaagacgaaaagaacggtgctaaggcacgcttcatgttcaacattgca
gacggaggcttcacggagctgcacacactgtggcagaatgaagaacgtgtggctgtgtcg
tccggtaagatgtatgacatctggcaccgacgccatgattactggcttttggccggcatc
gtaactcacggctacgctcgctggcaggacatccagaacgacccgcgctatgccatcctc
aatgagcccttcaaaactgagatgaacaaaggcaactatctggagatgaagaacaaattc
ctggcacggaggttcaagctgttagagcaggcgctggtaatcgaagagcagttaagaaga
gcggcttacctgaacatgacgcaggacaccacacatccagccatggcgctgaacacacgt
ttcgccgaggtcgagtgtctggccgagtcgcaccagcacctctccaaagagtctctggct
ggaaacaagccggctaatgcagtactacacaaagtgttgaatcagctggaggaactgctg
agcgatatgaaggcggacgtcacgaggctgccgtccatgctctcccgcattcctcctgta
tccgctcgactccacatgtctgagaggagcatcctgagccgtctcaccaaccgtgagcct
caaccccagcagccttttccacagggatcgtttgcctgttcttcaatgtacaataacagc
tttggaggaggatttcgaggtcctgctggagccgccatggttaactacagccagatgccc
ctggggccgtacgttagtgtgtcctcaaacggtcctccagcacccagcagccacatggac
aagaagtccagtgaggttctgagagacgtgtctccacctgacctcaaatccagcaaaccc
tcggacgtcatctgcatcgaagactag
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integrated database retrieval system
