Tachysurus fulvidraco (yellow catfish): 113657744
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Entry
113657744 CDS
T08119
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04510
Focal adhesion
tfd04512
ECM-receptor interaction
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113657744 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113657744 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113657744 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tfd00535
]
113657744 (col9a1a)
Proteoglycans [BR:
tfd00535
]
Extracellular matrix (ECM) proteoglycans
Others
113657744 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113657744
NCBI-ProteinID:
XP_027025556
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Position
2:complement(25328197..25339078)
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AA seq
683 aa
AA seq
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MAYARTLWTSLLVILLQIFLICSAQRASVGPRGPPGPPGFPGIDGIDGVRGPGPGPDGPP
GQDGDDGKNGSNGLPGNPGADGLSGPVGDPGPVGLIGPKGETGDPGPRGNTGVGEDGEAG
ADGEDGLPGELGKAGPPGSRGLRGPVGLPGPAGERGPPGVWNGEALCLNSCTRGLSGYSG
QPGMKGHKGIKGESGEPGRQGHKGEEGEQGPSGETGTQGKTGPQGLRGITGLMGSKGDRG
SRGVEGNVGPQGIQGAPGDRGQRGKVGEIGPRGAPGSLGVRGILGLPGPKGEAGLPGIEG
RDGIPGLPAVKGIPGKVGPPGEAGLQGLPGLPGIPGANGESGPKGNTGNPGVAGPIGNNG
KQGERGEQGEVGPVGSRGGPGERGVRGPDGPQGQPGLRGPKGNLGLPGVPGENGFRGQKG
DKGAVGLTGPKGEQGAPGEEGTPGEKGDLGDQGEPGEKGSRGKTGDAGNKGPEGMRGQHG
VDGEPGMPGPRGMQGDRGERGLPGTQGRPGKGPTDQDIKAVCMRVMQEQLAQLAASLTRP
ESGVVGLPGPPGLPGPTGPPGENGFPGHTGARGLPGLKGPPGLIGVKGPKGDTGDRGDRG
PTLQGPKGIPGPPGLPGEPGQPAYGNNGRDGMKGPRGVPGIPGNPGSPGTPGLNGYCEAS
QCILSQVLPEPLKDNSMKGPDSL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcatacgccaggactctgtggacatctttactggtgattttacttcaaatattcctc
atctgttcagctcagagggcctcagttggtcccagggggccacccggccctccaggtttt
cctggtatcgatggcattgatggagtgaggggcccaggccctggtccagatggtcctcca
ggccaagatggagatgatggaaaaaacggatctaatggactaccaggaaatccaggagca
gacggtttaagtggacctgttggcgatcccggaccagttgggctcattggaccaaaaggt
gaaaccggtgatcctggacctagaggaaatactggggttggggaggatggagaagctggt
gcagatggagaggatgggttgccaggagaactgggcaaagctggacctccaggaagccgt
ggcttgagaggacctgttggtcttccaggacctgcaggagagagaggtcccccaggtgtt
tggaatggtgaagctttgtgtctaaattcctgcacacgtggactgtccggctatagtgga
caaccaggaatgaagggccacaaaggtatcaaaggtgaatctggagaaccaggaagacaa
ggacataagggtgaagaaggagaacaaggcccctctggagaaactggaacacaaggaaaa
actggtccacagggactaagagggatcactggtttaatgggttctaaaggtgacaggggc
tctcgtggggtagaaggtaacgtgggtcctcagggcattcaaggagctcctggtgatcga
ggacaaagaggaaaagtgggtgagattggaccaagaggagctccagggtctctgggagtt
cgaggcattttaggattacctggacctaaaggagaagctggtttgcctggaattgaaggt
cgtgacggtatccctggattaccagcagttaagggtatccctggcaaagtaggccctcct
ggtgaagctggccttcaaggcctgcccggtttgccaggaatccctggagcaaatggtgag
agtgggccgaagggaaacactggtaatccaggcgtggcaggtccaattgggaacaacgga
aaacaaggtgaacgtggagaacagggagaagtgggacctgtaggatcaagaggtgggcca
ggtgaaagaggggtgaggggtccagatgggcctcagggacagccaggtctaaggggtcct
aaagggaatctcggtctacctggcgttccaggtgaaaatggttttcgtggtcagaaaggt
gacaagggtgcagttggtctcactgggccaaaaggcgaacagggagcacccggtgaggag
ggcacaccaggagaaaaaggggacctaggtgatcaaggggaacctggagagaaaggttcg
cggggaaaaacaggtgatgcgggaaacaaaggtccagaaggaatgcgtgggcagcatggg
gttgatggtgaaccaggtatgcctggacccagaggcatgcagggagatcgaggagaacgt
ggtttacctggaactcaaggacgaccaggtaaaggaccaacagatcaagacatcaaggcg
gtctgcatgagggttatgcaagagcagctcgctcagcttgcagcaagcctgacaaggcca
gagtctggcgttgtcgggttgccaggtcctcccggactccctggtcctactggcccgcct
ggagagaacggtttcccaggacacactggagcaagagggttgccaggtcttaaaggacct
cctggacttattggagtaaaaggaccaaaaggtgacacaggagacagaggagacagaggg
cctaccctacaagggcctaaaggcattcctgggccaccaggtcttccaggtgaacccggg
cagcctgcatatggcaacaatggacgtgatggtatgaaagggcctcgtggtgtgcccgga
attcccggcaatcctggatctcctgggactccaggtctgaacggatactgtgaggcatca
cagtgtatcctcagccaagtattaccagaacctctcaaagacaacagcatgaagggacca
gacagcctttaa
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